Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065028 | Potato | cytosol | 98.22 | 97.79 |
| Solyc03g064020.2.1 | Tomato | cytosol | 75.11 | 75.45 |
| Solyc04g012180.2.1 | Tomato | cytosol, unclear | 74.22 | 75.23 |
| Solyc10g079030.1.1 | Tomato | plastid | 75.56 | 75.22 |
| Solyc11g010100.1.1 | Tomato | cytosol | 73.33 | 73.66 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 60.89 | 63.13 |
| Solyc10g045550.1.1 | Tomato | nucleus | 59.11 | 61.86 |
| Solyc01g103380.2.1 | Tomato | nucleus | 58.67 | 61.68 |
| Solyc05g052900.2.1 | Tomato | cytosol | 58.67 | 61.4 |
| Solyc10g008840.2.1 | Tomato | cytosol | 58.67 | 61.4 |
| Solyc03g006270.2.1 | Tomato | cytosol | 58.67 | 61.11 |
| Solyc03g079900.2.1 | Tomato | cytosol | 58.22 | 60.93 |
| Solyc06g005810.2.1 | Tomato | cytosol, unclear | 58.22 | 60.65 |
| Solyc12g014080.1.1 | Tomato | cytosol | 58.22 | 60.37 |
| Solyc02g072180.2.1 | Tomato | cytosol | 58.22 | 60.37 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 57.78 | 59.91 |
| Solyc07g055290.2.1 | Tomato | plastid | 57.78 | 59.63 |
| Solyc06g076450.2.1 | Tomato | plastid | 56.89 | 59.53 |
| Solyc01g096220.2.1 | Tomato | plastid | 62.22 | 57.61 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005794 | GO:GO:0016787 | UniProt:K4AY78 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF647 | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| EnsemblPlantsGene:Solyc01g086850.2 | EnsemblPlants:Solyc01g086850.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI0002762D7C | SEG:seg | : |
Description
Ras-related protein RABA4c [Source:Projected from Arabidopsis thaliana (AT5G47960) UniProtKB/Swiss-Prot;Acc:Q9FE79]
Coordinates
chr1:-:81771059..81775731
Molecular Weight (calculated)
24766.4 Da
IEP (calculated)
7.407
GRAVY (calculated)
-0.192
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLYGGDFN QKIDYVFKAV LIGDSAVGKS QLLARFSRNE FSLDSKATIG VEFQTRTLEI DNKTIKAQIW DTAGQERYRA VTSAYYRGAV GAMLVYDITK
101: RQSFDHIARW LEELRGHADK NIVIMLVGNK TDLGSLRAVP TEDAKEFAEK ENLFFIETSA LESTNVDTAF VNVLTEIYRV VSKKSLVANE AESAAGSSAL
201: LRGKEIVVPG QGPVPSGSSY SCCRS
101: RQSFDHIARW LEELRGHADK NIVIMLVGNK TDLGSLRAVP TEDAKEFAEK ENLFFIETSA LESTNVDTAF VNVLTEIYRV VSKKSLVANE AESAAGSSAL
201: LRGKEIVVPG QGPVPSGSSY SCCRS
001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS
Arabidopsis Description
RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.