Factsheet for Solyc10g045550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc08g076530.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	Solyc02g093290.2.1	AT2G23420.1	21798944
AT1G09630.1	Solyc03g044430.2.1	AT2G23420.1	21798944
AT1G09630.1	Solyc08g076530.2.1	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103380.2.1	Tomato	nucleus	90.23	90.65
Bra020006.1-P	Field mustard	cytosol	87.44	86.64
CDY50888	Canola	cytosol	87.44	86.64
AT1G09630.1	Thale cress	cytosol	87.44	86.64
KRH26288	Soybean	endoplasmic reticulum	87.44	86.64
CDX93495	Canola	cytosol	86.98	86.18
KRH06049	Soybean	endoplasmic reticulum	86.51	86.11
GSMUA_Achr2P05630_001	Banana	cytosol	84.65	84.65
GSMUA_Achr6P28910_001	Banana	cytosol	84.65	83.87
PGSC0003DMT400045950	Potato	cytosol	99.07	83.53
GSMUA_Achr6P18430_001	Banana	cytosol	80.93	77.33
OQU77196	Sorghum	cytosol	79.07	77.27
Os05t0105100-01	Rice	golgi, plasma membrane	77.21	75.45
HORVU1Hr1G001920.2	Barley	cytosol	78.14	74.67
TraesCS1B01G018900.1	Wheat	cytosol	76.28	73.54
TraesCS1D01G013300.1	Wheat	cytosol	75.81	73.09
TraesCS1A01G015400.1	Wheat	cytosol	75.35	72.65
Solyc06g005810.2.1	Tomato	cytosol, unclear	72.09	71.76
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	73.95	71.3
Os03t0843100-01	Rice	cytosol	73.95	71.3
EER98344	Sorghum	cytosol	73.49	70.85
Solyc06g076450.2.1	Tomato	plastid	70.7	70.7
Solyc03g079900.2.1	Tomato	cytosol	70.7	70.7
Solyc05g052900.2.1	Tomato	cytosol	70.7	70.7
TraesCS5B01G530800.1	Wheat	cytosol	72.09	69.51
TraesCS4A01G343500.1	Wheat	cytosol	72.09	68.89
TraesCS5D01G529500.1	Wheat	cytosol	71.63	68.44
Solyc07g053480.2.1	Tomato	cytosol, plastid	68.84	68.2
Solyc07g055290.2.1	Tomato	plastid	67.91	66.97
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	67.44	66.82
Solyc12g014080.1.1	Tomato	cytosol	66.05	65.44
Solyc03g006270.2.1	Tomato	cytosol	65.12	64.81
Solyc02g072180.2.1	Tomato	cytosol	65.12	64.52
Solyc10g008840.2.1	Tomato	cytosol	64.19	64.19
Zm00001d034802_P001	Maize	cytosol	66.05	60.68
Zm00001d034803_P001	Maize	cytosol	65.12	59.83
Solyc01g086850.2.1	Tomato	cytosol	61.86	59.11
EER90540	Sorghum	cytosol	64.65	58.9
Solyc03g064020.2.1	Tomato	cytosol	60.93	58.48
Solyc04g012180.2.1	Tomato	cytosol, unclear	60.0	58.11
Solyc11g010100.1.1	Tomato	cytosol	60.0	57.59
Solyc10g079030.1.1	Tomato	plastid	60.0	57.08
Solyc01g096220.2.1	Tomato	plastid	57.21	50.62
HORVU5Hr1G120210.4	Barley	plastid	72.56	49.37

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0000911	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0007049	GO:GO:0008150
GO:GO:0009504	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	UniProt:K4CZS1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc10g045550.1	EnsemblPlants:Solyc10g045550.1.1	TIGRFAMs:TIGR00231	UniParc:UPI0002769A27	:	:

Description

No Description!

Coordinates

chr10:+:34584594..34590416

Molecular Weight (calculated)

23917.5 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.287

Length

215 amino acids

Sequence
(BLAST)

001: MARRADEEYD YLFKIVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLKVEGRT IKSQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPISF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEREGLS FIETSALEAT NVEKAFQMNL SEIYRIISKK SLSSGNPAPA NIKEGKTLVV
201: GAEEINTKKA CCSAS

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.