Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G074990.1 | |
| HORVU7Hr1G003710.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09630.1 | HORVU2Hr1G074990.1 | AT2G23420.1 | 21798944 |
| AT1G09630.1 | HORVU7Hr1G003710.1 | AT4G17720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G530800.1 | Wheat | cytosol | 68.04 | 96.41 |
| TraesCS4A01G343500.1 | Wheat | cytosol | 67.72 | 95.11 |
| TraesCS5D01G529500.1 | Wheat | cytosol | 67.41 | 94.67 |
| Os03t0843100-01 | Rice | cytosol | 57.91 | 82.06 |
| KRH06049 | Soybean | endoplasmic reticulum | 51.58 | 75.46 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 51.27 | 75.35 |
| Solyc01g103380.2.1 | Tomato | nucleus | 50.95 | 75.23 |
| PGSC0003DMT400064102 | Potato | cytosol | 50.95 | 75.23 |
| KRH26288 | Soybean | endoplasmic reticulum | 51.58 | 75.12 |
| CDY50888 | Canola | cytosol | 50.95 | 74.19 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 52.53 | 73.78 |
| CDX93495 | Canola | cytosol | 50.63 | 73.73 |
| Bra020006.1-P | Field mustard | cytosol | 50.63 | 73.73 |
| AT1G09630.1 | Thale cress | cytosol | 50.32 | 73.27 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 50.0 | 72.81 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 49.37 | 72.56 |
| Solyc10g045550.1.1 | Tomato | nucleus | 49.37 | 72.56 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 49.05 | 68.89 |
| HORVU5Hr1G114250.1 | Barley | cytosol, plasma membrane | 46.84 | 68.84 |
| Zm00001d034802_P001 | Maize | cytosol | 50.32 | 67.95 |
| Zm00001d034803_P001 | Maize | cytosol | 50.32 | 67.95 |
| EER90540 | Sorghum | cytosol | 50.63 | 67.8 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 45.89 | 67.13 |
| HORVU1Hr1G033390.2 | Barley | cytosol | 43.67 | 63.59 |
| HORVU7Hr1G089120.1 | Barley | cytosol | 48.42 | 61.94 |
| PGSC0003DMT400045950 | Potato | cytosol | 49.37 | 61.18 |
| HORVU3Hr1G071740.1 | Barley | plastid | 45.89 | 50.7 |
| HORVU3Hr1G085710.1 | Barley | cytosol, plastid | 49.05 | 49.36 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 34.49 | 49.32 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 35.44 | 49.12 |
| HORVU1Hr1G034400.4 | Barley | plasma membrane | 39.87 | 46.15 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | UniProt:A0A287SXY8 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:HORVU5Hr1G120210 | EnsemblPlants:HORVU5Hr1G120210.4 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF564 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000B473ABB | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:-:657257032..657259319
Molecular Weight (calculated)
34721.2 Da
IEP (calculated)
10.750
GRAVY (calculated)
-0.453
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: HFFPRSRTPS FRNKNQVFPP ALLPRPSPLR ASSQSRARSR SQPVSLLLGR EEAERERQRP GERRRRLRGI GRQRWPGKGT GGGWLIVGGR GGEGMAARRA
101: AAWEQGGDEY DYLFKVVLIG DSGVGKSNLL SRFTKNTFSL DSKSTIGVEF ATRTTQVEGK TIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTKAAT
201: FENVKRWLKE LRDHADSNIV IMLIGNKTDL RHLRSVATDK AAGFAEWEGL SFIETSALDA TNVDKAFQTV LAEIHRVISK KALTTEDSGA GVVGEGQSIL
301: VSGGEPTSVS SRCCSF
101: AAWEQGGDEY DYLFKVVLIG DSGVGKSNLL SRFTKNTFSL DSKSTIGVEF ATRTTQVEGK TIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTKAAT
201: FENVKRWLKE LRDHADSNIV IMLIGNKTDL RHLRSVATDK AAGFAEWEGL SFIETSALDA TNVDKAFQTV LAEIHRVISK KALTTEDSGA GVVGEGQSIL
301: VSGGEPTSVS SRCCSF
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.