Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
vacuole:
16581873
plasma membrane: 29385242 |
msms PMID:
16581873
doi
University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G321800.1 | Wheat | cytosol | 95.93 | 86.53 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 95.93 | 85.83 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 95.02 | 84.68 |
| Os09t0527600-01 | Rice | cytosol, plasma membrane | 85.07 | 78.66 |
| Zm00001d021246_P002 | Maize | cytosol | 84.62 | 75.4 |
| EER97073 | Sorghum | cytosol | 85.97 | 74.22 |
| GSMUA_Achr3P13850_001 | Banana | cytosol | 66.97 | 63.25 |
| GSMUA_Achr9P00860_001 | Banana | cytosol | 65.61 | 63.04 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 62.44 | 60.53 |
| KRH06418 | Soybean | cytosol | 65.16 | 59.02 |
| KRH47850 | Soybean | cytosol | 65.16 | 58.78 |
| AT1G01200.1 | Thale cress | cytosol | 62.44 | 58.23 |
| PGSC0003DMT400000356 | Potato | cytosol | 62.44 | 57.26 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 61.09 | 56.49 |
| Solyc01g096220.2.1 | Tomato | plastid | 61.99 | 56.38 |
| Bra033277.1-P | Field mustard | cytosol | 60.18 | 56.12 |
| CDX90017 | Canola | cytosol | 60.18 | 56.12 |
| KRH68938 | Soybean | cytosol | 59.73 | 55.93 |
| CDY15192 | Canola | cytosol | 59.73 | 55.7 |
| KRG97215 | Soybean | cytosol | 59.28 | 55.51 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 51.13 | 52.31 |
| HORVU5Hr1G114250.1 | Barley | cytosol, plasma membrane | 46.15 | 47.44 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 47.06 | 46.22 |
| HORVU1Hr1G033390.2 | Barley | cytosol | 44.8 | 45.62 |
| HORVU7Hr1G089120.1 | Barley | cytosol | 50.23 | 44.94 |
| HORVU1Hr1G034400.4 | Barley | plasma membrane | 52.04 | 42.12 |
| HORVU3Hr1G071740.1 | Barley | plastid | 47.96 | 37.06 |
| HORVU3Hr1G085710.1 | Barley | cytosol, plastid | 49.77 | 35.03 |
| HORVU5Hr1G120210.4 | Barley | plastid | 49.32 | 34.49 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287RZU8 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:HORVU5Hr1G080990 | EnsemblPlants:HORVU5Hr1G080990.3 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF679 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000B46613F | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:+:562618926..562621230
Molecular Weight (calculated)
24369.7 Da
IEP (calculated)
6.047
GRAVY (calculated)
-0.325
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: GEIDYVFKVV VVGDSAVGKT QLLGRFAKDE FFLDSKSTIG VEFQTRTLTL HRKRVKAQIW DTAGQERYYR GALGAMVVYD VTRRATFDHV PRWVEELRAH
101: ADGSTVVALV GNKADAPAHR REVPADEAAR FAEEQGLFFS EASALTGDNV ERAFLALLEE VFAVVSRRAL ELDEARRTRN GDGDGDRGQA LSLRGTTVDL
201: HDPIMETSAM KKTASSQCSC S
101: ADGSTVVALV GNKADAPAHR REVPADEAAR FAEEQGLFFS EASALTGDNV ERAFLALLEE VFAVVSRRAL ELDEARRTRN GDGDGDRGQA LSLRGTTVDL
201: HDPIMETSAM KKTASSQCSC S
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.