Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01200.1 | CDY07736 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | CDY54457 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | CDY61529 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | CDY63156 | AT2G38360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033277.1-P | Field mustard | cytosol | 98.73 | 98.73 |
| CDX90017 | Canola | cytosol | 98.73 | 98.73 |
| AT1G01200.1 | Thale cress | cytosol | 88.61 | 88.61 |
| KRH68938 | Soybean | cytosol | 68.78 | 69.07 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 69.2 | 68.62 |
| KRG97215 | Soybean | cytosol | 67.93 | 68.22 |
| Solyc01g096220.2.1 | Tomato | plastid | 69.62 | 67.9 |
| KRH47850 | Soybean | cytosol | 70.04 | 67.76 |
| KRH06418 | Soybean | cytosol | 69.62 | 67.62 |
| PGSC0003DMT400000356 | Potato | cytosol | 67.51 | 66.39 |
| GSMUA_Achr9P00860_001 | Banana | cytosol | 63.29 | 65.22 |
| TraesCS7B01G287900.1 | Wheat | cytosol | 58.65 | 62.05 |
| GSMUA_Achr3P13850_001 | Banana | cytosol | 60.76 | 61.54 |
| TraesCS7D01G381500.1 | Wheat | cytosol | 57.38 | 60.71 |
| Os09t0527600-01 | Rice | cytosol, plasma membrane | 61.18 | 60.67 |
| Os06t0714600-01 | Rice | cytosol | 57.38 | 60.44 |
| CDX86332 | Canola | cytosol | 56.54 | 60.09 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 55.7 | 59.73 |
| CDY54519 | Canola | cytosol | 56.12 | 59.64 |
| CDY69836 | Canola | cytosol | 56.12 | 59.38 |
| CDX73833 | Canola | cytosol | 54.85 | 58.82 |
| CDY00758 | Canola | cytosol | 54.85 | 58.82 |
| CDY52622 | Canola | cytosol | 54.85 | 58.56 |
| CDY50568 | Canola | cytosol | 54.85 | 58.56 |
| CDY08447 | Canola | cytosol | 54.43 | 58.11 |
| CDY42133 | Canola | cytosol | 54.43 | 58.11 |
| EER90389 | Sorghum | cytosol | 50.63 | 57.42 |
| CDX96994 | Canola | cytosol | 54.01 | 57.4 |
| CDX69843 | Canola | cytosol | 54.01 | 57.4 |
| TraesCS5D01G321800.1 | Wheat | cytosol | 59.07 | 57.14 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 59.49 | 56.85 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 59.07 | 56.68 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 54.43 | 56.58 |
| CDY18682 | Canola | cytosol | 53.59 | 56.44 |
| EER97073 | Sorghum | cytosol | 60.76 | 56.25 |
| CDX81274 | Canola | cytosol | 53.59 | 55.95 |
| Zm00001d021246_P002 | Maize | cytosol | 57.81 | 55.24 |
| CDY50888 | Canola | cytosol | 50.21 | 54.84 |
| CDX90160 | Canola | cytosol | 49.37 | 54.42 |
| CDX93495 | Canola | cytosol | 49.79 | 54.38 |
| CDY35757 | Canola | cytosol | 49.37 | 53.67 |
| CDY20100 | Canola | cytosol | 49.37 | 53.67 |
| CDX94631 | Canola | cytosol | 48.95 | 53.21 |
| CDY34094 | Canola | cytosol | 48.95 | 53.21 |
| CDY30818 | Canola | cytosol | 48.95 | 53.21 |
| CDY15659 | Canola | cytosol | 48.95 | 53.21 |
| CDX82451 | Canola | cytosol | 48.52 | 52.75 |
| CDY55638 | Canola | cytosol | 48.1 | 52.53 |
| CDY01540 | Canola | cytosol | 48.1 | 52.53 |
| CDY02867 | Canola | cytosol | 48.1 | 52.53 |
| CDY32661 | Canola | cytosol | 48.1 | 52.53 |
| CDY09919 | Canola | cytosol | 47.26 | 52.34 |
| CDX99430 | Canola | cytosol | 47.26 | 52.34 |
| CDY06256 | Canola | cytosol | 47.26 | 52.34 |
| CDX75804 | Canola | cytosol | 48.1 | 52.29 |
| CDX79548 | Canola | cytosol | 43.46 | 52.28 |
| CDY33014 | Canola | cytosol | 47.68 | 52.07 |
| CDY64916 | Canola | cytosol | 46.84 | 51.63 |
| CDY62557 | Canola | cytosol | 46.84 | 51.63 |
| CDX76522 | Canola | cytosol | 47.26 | 51.61 |
| CDY06703 | Canola | cytosol | 46.84 | 51.39 |
| CDX96799 | Canola | cytosol | 46.84 | 51.39 |
| CDY71720 | Canola | cytosol | 46.84 | 51.15 |
| CDY35128 | Canola | cytosol | 46.41 | 50.93 |
| CDX87774 | Canola | cytosol | 46.41 | 50.93 |
| CDY40023 | Canola | cytosol | 45.57 | 50.0 |
| CDY60884 | Canola | cytosol | 45.99 | 48.88 |
| CDY06210 | Canola | cytosol | 45.15 | 47.98 |
| CDY09976 | Canola | cytosol | 45.15 | 47.98 |
| CDX69367 | Canola | cytosol | 36.71 | 47.28 |
| CDX80299 | Canola | cytosol | 47.68 | 43.8 |
| CDX86101 | Canola | cytosol | 47.26 | 43.75 |
| CDX81790 | Canola | plastid | 45.57 | 40.45 |
| CDX99094 | Canola | cytosol | 47.26 | 39.02 |
| CDX69369 | Canola | cytosol | 56.12 | 32.6 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:A0A078FQQ6 | UniProt:A0A078FQQ6 | EnsemblPlants:CDY15192 | ProteinID:CDY15192 |
| ProteinID:CDY15192.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00085378001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF345 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE2668 |
Description
BnaC05g00710DBnaC05g00710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQQ6]
Coordinates
chrLK032052:+:378479..379903
Molecular Weight (calculated)
26199.9 Da
IEP (calculated)
5.190
GRAVY (calculated)
-0.243
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEEMSGETP ENKHVSRPTL PEKIDYVFKV VVIGDSAVGK TQLLSRFTQN EFCYDSKSTI GVEFQTRTIT HQGKLVKAQI WDTAGQERYR AVTSAYYRGA
101: LGAMVVYDIT KRVSFDHVAR WVEDLRAHAD DSAVIMLVGN KADLAADKRA VTTEDAVEFA ETHRLFFSEV SALSGGNVDE AFFRLLEEIF SRVVVARKAL
201: ECQNGTTAKL DGSRIDVIIS GSDLETGKTN EPASCSC
101: LGAMVVYDIT KRVSFDHVAR WVEDLRAHAD DSAVIMLVGN KADLAADKRA VTTEDAVEFA ETHRLFFSEV SALSGGNVDE AFFRLLEEIF SRVVVARKAL
201: ECQNGTTAKL DGSRIDVIIS GSDLETGKTN EPASCSC
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.