CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93818
KRH00333
KRH32827
KRH49465
KRH65569
KRH76033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	KRG93818	AT2G38360.1	21798944
AT1G01200.1	KRH00333	AT2G38360.1	21798944
AT1G01200.1	KRH32827	AT2G38360.1	21798944
AT1G01200.1	KRH49465	AT2G38360.1	21798944
AT1G01200.1	KRH65569	AT2G38360.1	21798944
AT1G01200.1	KRH76033	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06418	Soybean	cytosol	97.55	97.95
KRH68938	Soybean	cytosol	83.27	86.44
KRG97215	Soybean	cytosol	82.86	86.02
VIT_15s0048g03000.t01	Wine grape	cytosol	76.73	78.66
PGSC0003DMT400000356	Potato	cytosol	75.51	76.76
Solyc01g096220.2.1	Tomato	plastid	74.69	75.31
AT1G01200.1	Thale cress	cytosol	68.98	71.31
GSMUA_Achr9P00860_001	Banana	cytosol	66.12	70.43
Bra033277.1-P	Field mustard	cytosol	67.76	70.04
CDX90017	Canola	cytosol	67.76	70.04
CDY15192	Canola	cytosol	67.76	70.04
GSMUA_Achr3P13850_001	Banana	cytosol	63.67	66.67
KRG97554	Soybean	cytosol, endoplasmic reticulum	60.41	66.37
TraesCS7B01G287900.1	Wheat	cytosol	60.41	66.07
KRH31313	Soybean	endoplasmic reticulum	60.0	65.92
TraesCS7D01G381500.1	Wheat	cytosol	59.59	65.18
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	58.78	65.16
Os06t0714600-01	Rice	cytosol	59.18	64.44
KRH59301	Soybean	cytosol, endoplasmic reticulum	60.0	64.19
Os09t0527600-01	Rice	cytosol, plasma membrane	62.04	63.6
KRH33003	Soybean	cytosol	57.55	62.67
TraesCS5B01G316300.1	Wheat	cytosol	63.27	62.5
TraesCS5D01G321800.1	Wheat	cytosol	62.45	62.45
EER90389	Sorghum	cytosol	53.06	62.2
KRH75359	Soybean	endoplasmic reticulum	56.33	61.88
TraesCS5A01G315700.1	Wheat	cytosol	62.04	61.54
KRG88929	Soybean	cytosol	55.92	61.44
KRH71891	Soybean	cytosol	55.92	61.44
KRH43151	Soybean	cytosol, endoplasmic reticulum	58.78	60.76
HORVU7Hr1G091490.3	Barley	cytosol	56.33	60.53
Zm00001d021246_P002	Maize	cytosol	60.41	59.68
KRH15036	Soybean	cytosol, nucleus	52.24	59.26
EER97073	Sorghum	cytosol	60.82	58.2
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	51.43	58.06
KRH50137	Soybean	cytosol, mitochondrion	51.43	58.06
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	51.43	58.06
KRH29738	Soybean	endoplasmic reticulum	51.02	57.87
KRH24729	Soybean	endoplasmic reticulum, nucleus	51.02	57.87
KRH20359	Soybean	cytosol, endoplasmic reticulum	50.61	57.14
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	50.61	57.14
KRH26288	Soybean	endoplasmic reticulum	50.2	56.68
KRH30863	Soybean	cytosol	50.2	56.68
KRH06049	Soybean	endoplasmic reticulum	49.8	56.48
KRH25681	Soybean	cytosol	49.8	56.22
KRH27364	Soybean	endoplasmic reticulum	49.8	56.22
KRH55839	Soybean	endoplasmic reticulum	49.8	56.22
KRH27503	Soybean	cytosol	52.24	56.14
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.39	55.76
KRH36458	Soybean	cytosol	51.84	55.7
KRH22259	Soybean	cytosol, nucleus	48.98	55.05
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	48.57	54.59
KRH27001	Soybean	cytosol, endoplasmic reticulum	47.35	53.21
KRH22324	Soybean	cytosol, endoplasmic reticulum	46.94	52.75

Protein Annotations

EntrezGene:100799439	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02004176	EnsemblPlantsGene:GLYMA_07G052800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787
UniProt:I1KHS6	EnsemblPlants:KRH47850	ProteinID:KRH47850	ProteinID:KRH47850.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002337D60	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:4628560..4630190

Molecular Weight (calculated)

27270.3 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.282

Length

245 amino acids

Sequence
(BLAST)

001: MNQEMNGVEA EKRQENGHEK VDYDVQEKID YVFKVVVIGD SAVGKTQILS RFAKNEFCFD SKSTIGVEFQ TRTVTINGKV IKAQIWDTAG QERYRAVTSA
101: YYRGALGAML VYDITKRQSF DHVARWVEEL RAHADSSIVI MLVGNKADLV DQRMVPTEDA VEFAEDQGLF FSETSALSGD NVESAFLKLL EEINRVVSKK
201: ALECGYGKEN GDNNVVASLN GTKVDIILGP ELEISEMKKL SSCSC

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.