CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59301	Soybean	cytosol, endoplasmic reticulum	89.03	92.14
KRH31313	Soybean	endoplasmic reticulum	81.43	86.55
KRG97554	Soybean	cytosol, endoplasmic reticulum	80.59	85.65
AT5G65270.1	Thale cress	cytosol	76.37	80.09
Bra037810.1-P	Field mustard	cytosol	74.68	78.67
CDY18682	Canola	cytosol	74.68	78.67
GSMUA_Achr3P21290_001	Banana	cytosol	71.73	77.63
CDX69843	Canola	cytosol	73.0	77.58
CDX81274	Canola	cytosol	74.26	77.53
GSMUA_Achr3P01690_001	Banana	cytosol	71.31	77.17
Bra009040.1-P	Field mustard	cytosol	72.57	77.13
CDX96994	Canola	cytosol	72.57	77.13
Zm00001d014278_P001	Maize	extracellular, plasma membrane	70.46	76.96
GSMUA_Achr8P18090_001	Banana	cytosol	70.46	76.61
OQU91938	Sorghum	cytosol	70.04	76.5
Os10t0377400-01	Rice	cytosol	69.2	75.93
TraesCS1D01G136900.1	Wheat	cytosol	68.78	75.46
TraesCS1B01G152100.1	Wheat	cytosol	68.78	75.46
TraesCS1A01G131500.2	Wheat	cytosol	68.78	75.46
Bra011818.1-P	Field mustard	cytosol	70.89	75.34
AT4G39990.1	Thale cress	cytosol	70.89	75.0
CDY69836	Canola	cytosol	70.89	75.0
Zm00001d048222_P001	Maize	extracellular, plasma membrane	68.35	74.65
EER92725	Sorghum	cytosol	68.35	74.65
Zm00001d028002_P001	Maize	mitochondrion	67.93	74.19
KRH75359	Soybean	endoplasmic reticulum	66.24	70.4
KRG88929	Soybean	cytosol	65.4	69.51
KRH33003	Soybean	cytosol	64.98	68.44
KRH71891	Soybean	cytosol	63.71	67.71
KRH15036	Soybean	cytosol, nucleus	57.81	63.43
KRH24729	Soybean	endoplasmic reticulum, nucleus	56.96	62.5
KRH29738	Soybean	endoplasmic reticulum	56.96	62.5
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	56.96	62.21
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.54	61.75
KRH27364	Soybean	endoplasmic reticulum	56.54	61.75
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	56.12	61.29
KRH26288	Soybean	endoplasmic reticulum	55.27	60.37
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.27	60.09
KRH22259	Soybean	cytosol, nucleus	55.27	60.09
KRH06049	Soybean	endoplasmic reticulum	54.43	59.72
KRH50137	Soybean	cytosol, mitochondrion	54.43	59.45
KRH06418	Soybean	cytosol	60.76	59.02
KRH47850	Soybean	cytosol	60.76	58.78
HORVU1Hr1G034400.4	Barley	plasma membrane	67.51	58.61
KRH20359	Soybean	cytosol, endoplasmic reticulum	53.59	58.53
KRH68938	Soybean	cytosol	57.38	57.63
KRH55839	Soybean	endoplasmic reticulum	52.74	57.6
KRH25681	Soybean	cytosol	52.74	57.6
KRG97215	Soybean	cytosol	56.96	57.2
KRH30863	Soybean	cytosol	52.32	57.14
KRH27503	Soybean	cytosol	54.85	57.02
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	51.9	56.68
KRH36458	Soybean	cytosol	54.01	56.14
KRH27001	Soybean	cytosol, endoplasmic reticulum	51.05	55.5
KRH22324	Soybean	cytosol, endoplasmic reticulum	50.21	54.59
CDX69369	Canola	cytosol	72.15	41.91

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A0A0R0IVU0	EMBL:ACUP02004847	EMBL:ACUP02004848	EnsemblPlantsGene:GLYMA_08G133800
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0016787	EnsemblPlants:KRH43151	ProteinID:KRH43151	ProteinID:KRH43151.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00023C59FF	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:10264636..10268066

Molecular Weight (calculated)

26347.5 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.181

Length

237 amino acids

Sequence
(BLAST)

001: MAGAGGGYGD ANQRIDYVFK VVLIGDSAVG KSQILARFAR NEFSLDSKST IGVEFQTRTL VIDHKTVKAQ IWDTAGQERY RAVTSAYYRG AVGAMLVYDI
101: TKRQTFDHIP RWLEELRNHA DKNIVIILIG NKCDLESQRD VPTEDAKEFA EKEGLFFLET SALEATNVET AFITVLTEIY NIVNKKNLTA DENQGNGNSA
201: SLSGQKIIGI NPLQLNIKCK DLLKDIPYSN LVILQIV

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.