CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15036	Soybean	cytosol, nucleus	90.78	91.2
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	89.86	89.86
KRH29738	Soybean	endoplasmic reticulum	86.64	87.04
KRH24729	Soybean	endoplasmic reticulum, nucleus	86.64	87.04
Solyc03g079900.2.1	Tomato	cytosol	84.79	85.58
PGSC0003DMT400055848	Potato	cytosol	84.33	85.51
Solyc05g052900.2.1	Tomato	cytosol	84.33	85.12
PGSC0003DMT400069776	Potato	cytosol	84.33	85.12
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	82.95	83.72
GSMUA_Achr6P14930_001	Banana	cytosol	65.44	83.04
Zm00001d034675_P002	Maize	cytosol	81.57	82.33
Os03t0823700-01	Rice	plasma membrane	81.57	82.33
KXG37238	Sorghum	cytosol	81.57	82.33
TraesCS5D01G498600.1	Wheat	cytosol	81.11	81.86
TraesCS5B01G498600.1	Wheat	cytosol, plastid	81.11	81.86
TraesCS5A01G485100.1	Wheat	cytosol, golgi	81.11	81.86
GSMUA_Achr9P03770_001	Banana	cytosol	70.51	81.82
VIT_13s0019g02470.t01	Wine grape	cytosol	89.86	80.91
GSMUA_Achr7P26890_001	Banana	cytosol	69.59	80.75
GSMUA_Achr5P28770_001	Banana	cytosol	79.26	79.26
GSMUA_Achr8P02230_001	Banana	plasma membrane	78.34	78.7
KRH06049	Soybean	endoplasmic reticulum	72.81	73.15
KRH26288	Soybean	endoplasmic reticulum	72.81	72.81
KRH50137	Soybean	cytosol, mitochondrion	70.05	70.05
KRH20359	Soybean	cytosol, endoplasmic reticulum	69.59	69.59
KRH22259	Soybean	cytosol, nucleus	69.59	69.27
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	69.12	68.81
KRH25681	Soybean	cytosol	68.66	68.66
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	68.2	68.2
KRH30863	Soybean	cytosol	67.74	67.74
KRH55839	Soybean	endoplasmic reticulum	67.74	67.74
KRH27364	Soybean	endoplasmic reticulum	67.28	67.28
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	66.82	66.82
KRH22324	Soybean	cytosol, endoplasmic reticulum	63.59	63.3
KRH27001	Soybean	cytosol, endoplasmic reticulum	63.13	62.84
KRH31313	Soybean	endoplasmic reticulum	61.29	59.64
KRG97554	Soybean	cytosol, endoplasmic reticulum	61.29	59.64
KRH59301	Soybean	cytosol, endoplasmic reticulum	62.21	58.95
KRH75359	Soybean	endoplasmic reticulum	59.45	57.85
KRH33003	Soybean	cytosol	59.91	57.78
KRG88929	Soybean	cytosol	58.53	56.95
KRH71891	Soybean	cytosol	58.53	56.95
KRH43151	Soybean	cytosol, endoplasmic reticulum	61.29	56.12
KRH27503	Soybean	cytosol	55.76	53.07
KRH36458	Soybean	cytosol	54.84	52.19
KRH47850	Soybean	cytosol	58.06	51.43
KRH68938	Soybean	cytosol	55.76	51.27
KRH06418	Soybean	cytosol	57.6	51.23
KRG97215	Soybean	cytosol	55.3	50.85

Protein Annotations

EntrezGene:100799521	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02010820	EnsemblPlantsGene:GLYMA_18G033600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1MZ84	EnsemblPlants:KRG97821	ProteinID:KRG97821	ProteinID:KRG97821.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000233F2A0	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:2587313..2589365

Molecular Weight (calculated)

24142.6 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.234

Length

217 amino acids

Sequence
(BLAST)

001: MAYKVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVQRWLREL RDHADSNIVI MMAGNKSDLN HLRAVSTDDA QNLAEREALS FLETSALEAF NVEKAFQTIL FDIYQIMSKK ALAAQGAAST TSLPHGTTIN
201: VSNMSGSVEK KSACCSN

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.