Factsheet for GSMUA_Achr5P28770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03770_001	Banana	cytosol	77.88	90.37
GSMUA_Achr7P26890_001	Banana	cytosol	76.96	89.3
GSMUA_Achr8P02230_001	Banana	plasma membrane	87.1	87.5
GSMUA_Achr6P14930_001	Banana	cytosol	65.44	83.04
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	79.72	79.72
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	79.26	79.26
KRH15036	Soybean	cytosol, nucleus	78.34	78.7
Solyc03g079900.2.1	Tomato	cytosol	77.42	78.14
PGSC0003DMT400055848	Potato	cytosol	76.96	78.04
PGSC0003DMT400069776	Potato	cytosol	76.5	77.21
Solyc05g052900.2.1	Tomato	cytosol	75.12	75.81
VIT_13s0019g02470.t01	Wine grape	cytosol	80.18	72.2
GSMUA_Achr2P05630_001	Banana	cytosol	70.05	70.7
GSMUA_Achr6P28910_001	Banana	cytosol	67.28	67.28
GSMUA_Achr6P18430_001	Banana	cytosol	69.59	67.11
GSMUA_Achr3P15680_001	Banana	plasma membrane	65.44	65.44
GSMUA_Achr9P05610_001	Banana	cytosol	64.52	65.12
GSMUA_Achr8P27780_001	Banana	cytosol	53.92	65.0
GSMUA_Achr3P15540_001	Banana	cytosol	64.52	64.81
GSMUA_Achr8P27180_001	Banana	cytosol	64.52	64.81
GSMUA_Achr5P09130_001	Banana	cytosol	64.52	64.52
GSMUA_Achr1P11940_001	Banana	cytosol	61.75	62.04
GSMUA_Achr4P02540_001	Banana	cytosol	54.38	61.46
GSMUA_Achr6P31790_001	Banana	cytosol	47.0	61.45
GSMUA_Achr3P01690_001	Banana	cytosol	60.83	60.27
GSMUA_Achr8P18090_001	Banana	cytosol	60.37	60.09
GSMUA_Achr4P02760_001	Banana	cytosol	52.53	60.0
GSMUA_Achr1P16540_001	Banana	cytosol	55.3	59.7
GSMUA_Achr3P21290_001	Banana	cytosol	59.45	58.9
GSMUA_Achr3P11810_001	Banana	cytosol	60.83	58.67
GSMUA_Achr1P04780_001	Banana	cytosol	53.46	58.0
GSMUA_Achr7P14790_001	Banana	cytosol	49.77	56.25
GSMUA_Achr1P19620_001	Banana	cytosol	59.45	55.84
GSMUA_Achr3P13850_001	Banana	cytosol	56.68	52.56
GSMUA_Achr9P00860_001	Banana	cytosol	51.61	48.7
GSMUA_Achr7P10970_001	Banana	cytosol	53.46	45.85

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G28770_001	EnsemblPlants:GSMUA_Achr5P28770_001	EnsemblPlants:GSMUA_Achr5T28770_001
UniProt:M0T2K1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002951436	SEG:seg	:

Description

Ras-related protein Rab11C [Source:GMGC_GENE;Acc:GSMUA_Achr5G28770_001]

Coordinates

chr5:-:28792299..28794030

Molecular Weight (calculated)

23841.3 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.241

Length

217 amino acids

Sequence
(BLAST)

001: MAHRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFSLD SKSTIGVEFA TKTLQIEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDMTKKQTF
101: DNVQRWLREL RDHADSNIVI MMVGNKSDLQ HLRAVSEDDG QVLAEKEGLS FLETSALESL NVDKAFHSIL TEIYRIINKK ALAAKVAAKT AAPPTQGTTI
201: DVSDSAGGSK GACCSTA

Best Arabidopsis Sequence Match ( AT3G46830.2 )
(BLAST)

001: MTHRVDQEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTTQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVAEEDG QSLAEKEGLS FLETSALEAT NVEKAFQTIL GEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVDDTSGGA KRACCSS

Arabidopsis Description

RABA2CRas-related protein RABA2c [Source:UniProtKB/Swiss-Prot;Acc:Q96283]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.