Factsheet for GSMUA_Achr3P15540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27180_001	Banana	cytosol	93.52	93.52
VIT_10s0003g00550.t01	Wine grape	cytosol	90.74	90.32
VIT_19s0014g01820.t01	Wine grape	cytosol	89.35	88.94
PGSC0003DMT400020208	Potato	cytosol	88.89	88.48
PGSC0003DMT400024319	Potato	cytosol	88.43	88.02
Solyc07g053480.2.1	Tomato	cytosol, plastid	88.43	88.02
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	87.96	87.56
KRH55839	Soybean	endoplasmic reticulum	87.96	87.56
KRH25681	Soybean	cytosol	87.96	87.56
AT5G60860.1	Thale cress	cytosol	87.5	87.1
KRH50137	Soybean	cytosol, mitochondrion	87.5	87.1
KRH20359	Soybean	cytosol, endoplasmic reticulum	87.5	87.1
GSMUA_Achr1P11940_001	Banana	cytosol	85.19	85.19
GSMUA_Achr5P09130_001	Banana	cytosol	85.19	84.79
AT3G15060.1	Thale cress	cytosol	85.19	84.79
VIT_12s0028g02650.t01	Wine grape	cytosol	84.72	84.72
KRH30863	Soybean	cytosol	84.72	84.33
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	84.26	83.87
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	84.26	83.87
CDY34094	Canola	cytosol	84.26	83.49
Bra032914.1-P	Field mustard	cytosol	84.26	83.49
CDY30818	Canola	cytosol	84.26	83.49
Solyc12g014080.1.1	Tomato	cytosol	83.8	83.41
PGSC0003DMT400033395	Potato	cytosol	83.33	83.33
CDX90160	Canola	cytosol	82.87	83.26
PGSC0003DMT400058784	Potato	cytosol	82.87	83.26
Solyc10g008840.2.1	Tomato	cytosol	82.87	83.26
Bra010860.1-P	Field mustard	cytosol	82.87	83.26
CDY15659	Canola	cytosol	83.8	83.03
AT1G28550.1	Thale cress	cytosol	83.8	83.03
Solyc03g006270.2.1	Tomato	cytosol	82.87	82.87
GSMUA_Achr4P02760_001	Banana	cytosol	72.69	82.63
CDX94631	Canola	cytosol	83.33	82.57
Bra030105.1-P	Field mustard	cytosol	83.33	82.57
CDY35757	Canola	cytosol	83.33	82.57
Bra001581.1-P	Field mustard	cytosol	82.87	82.11
CDX79548	Canola	cytosol	74.54	81.73
CDX82451	Canola	cytosol	82.41	81.65
GSMUA_Achr1P04780_001	Banana	cytosol	75.46	81.5
AT2G33870.1	Thale cress	cytosol	81.94	81.19
Bra022959.1-P	Field mustard	cytosol	81.48	80.73
CDX75804	Canola	cytosol	81.48	80.73
CDY55638	Canola	cytosol	81.02	80.65
CDY01540	Canola	cytosol	81.02	80.65
Bra012597.1-P	Field mustard	cytosol	80.56	80.18
AT4G18430.1	Thale cress	cytosol	80.09	79.72
Bra021589.1-P	Field mustard	cytosol	79.63	78.9
CDY20100	Canola	cytosol	79.63	78.9
CDX76522	Canola	cytosol	79.17	78.8
Bra021009.1-P	Field mustard	cytosol	78.7	78.34
KRH27001	Soybean	cytosol, endoplasmic reticulum	78.24	77.52
GSMUA_Achr8P27780_001	Banana	cytosol	64.35	77.22
KRH22324	Soybean	cytosol, endoplasmic reticulum	77.78	77.06
GSMUA_Achr7P14790_001	Banana	cytosol	68.06	76.56
GSMUA_Achr3P15680_001	Banana	plasma membrane	76.39	76.04
GSMUA_Achr4P02540_001	Banana	cytosol	67.13	75.52
GSMUA_Achr9P05610_001	Banana	cytosol	75.0	75.35
CDY60884	Canola	cytosol	72.22	69.96
GSMUA_Achr6P31790_001	Banana	cytosol	53.7	69.88
GSMUA_Achr6P14930_001	Banana	cytosol	54.17	68.42
GSMUA_Achr2P05630_001	Banana	cytosol	64.35	64.65
GSMUA_Achr5P28770_001	Banana	cytosol	64.81	64.52
GSMUA_Achr9P03770_001	Banana	cytosol	55.56	64.17
GSMUA_Achr6P28910_001	Banana	cytosol	64.35	64.06
GSMUA_Achr7P26890_001	Banana	cytosol	54.63	63.1
GSMUA_Achr6P18430_001	Banana	cytosol	65.28	62.67
GSMUA_Achr8P02230_001	Banana	plasma membrane	61.11	61.11
GSMUA_Achr3P11810_001	Banana	cytosol	61.57	59.11
GSMUA_Achr8P18090_001	Banana	cytosol	57.41	56.88
GSMUA_Achr1P19620_001	Banana	cytosol	60.65	56.71
GSMUA_Achr3P01690_001	Banana	cytosol	57.41	56.62
GSMUA_Achr1P16540_001	Banana	cytosol	52.31	56.22
GSMUA_Achr3P21290_001	Banana	cytosol	56.94	56.16
GSMUA_Achr7P10970_001	Banana	cytosol	65.28	55.73
GSMUA_Achr3P13850_001	Banana	cytosol	55.09	50.85
GSMUA_Achr9P00860_001	Banana	cytosol	53.24	50.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G15540_001	EnsemblPlants:GSMUA_Achr3P15540_001	EnsemblPlants:GSMUA_Achr3T15540_001
UniProt:M0SEX0	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294FA0F	:

Description

Ras-related protein Rab11B [Source:GMGC_GENE;Acc:GSMUA_Achr3G15540_001]

Coordinates

chr3:-:16572599..16577587

Molecular Weight (calculated)

24172.4 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.350

Length

216 amino acids

Sequence
(BLAST)

001: MAYRSDDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIRVEDKV VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDVTRHTTF
101: ENVERWMKEL RDHTDSSIVI MLVGNKADLR HLRAVTVEDS KAFAERENSF FMETSALEST NVDNAFTEVL TQIYRVTSRK ALDAGDDPTT LPKGQTINIG
201: THDDVSAVKK AGCCSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.