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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, unclear
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020208 Potato cytosol 99.08 99.08
Solyc07g053480.2.1 Tomato cytosol, plastid 92.63 92.63
Os09t0327100-01 Rice plasma membrane 90.32 90.74
OQU89311 Sorghum cytosol 90.32 90.74
HORVU5Hr1G056470.1 Barley cytosol, plasma membrane 90.32 90.74
TraesCS5A01G184100.1 Wheat golgi, plastid 90.32 90.74
TraesCS5D01G188900.1 Wheat cytosol 89.86 90.28
KRH25681 Soybean cytosol 89.86 89.86
TraesCS7D01G289000.1 Wheat cytosol 89.4 89.81
TraesCS7A01G285200.1 Wheat cytosol 89.4 89.81
VIT_12s0028g02650.t01 Wine grape cytosol 89.4 89.81
TraesCS5B01G182200.1 Wheat cytosol 89.4 89.81
KRH55839 Soybean endoplasmic reticulum 89.4 89.4
TraesCS7B01G200600.1 Wheat cytosol 88.94 89.35
Os05t0564400-02 Rice plasma membrane 88.94 88.94
EES19950 Sorghum cytosol 87.56 87.96
GSMUA_Achr3P15540_001 Banana cytosol 87.56 87.96
Solyc12g014080.1.1 Tomato cytosol 87.56 87.56
Zm00001d009572_P001 Maize cytosol, mitochondrion, plasma membrane 86.64 87.04
GSMUA_Achr8P27180_001 Banana cytosol 85.71 86.11
TraesCS1A01G398400.1 Wheat cytosol 85.71 86.11
GSMUA_Achr1P11940_001 Banana cytosol 85.71 86.11
GSMUA_Achr5P09130_001 Banana cytosol 85.71 85.71
TraesCS1D01G405900.1 Wheat cytosol 85.25 85.65
TraesCS1B01G426300.1 Wheat cytosol 85.25 85.65
Zm00001d039016_P001 Maize cytosol, mitochondrion, plasma membrane 85.25 85.65
GSMUA_Achr4P02760_001 Banana cytosol 72.81 83.16
Solyc03g006270.2.1 Tomato cytosol 82.49 82.87
GSMUA_Achr1P04780_001 Banana cytosol 76.04 82.5
Solyc10g008840.2.1 Tomato cytosol 81.57 82.33
KRH27001 Soybean cytosol, endoplasmic reticulum 80.18 79.82
Solyc02g072180.2.1 Tomato cytosol 79.72 79.72
KRH22324 Soybean cytosol, endoplasmic reticulum 79.26 78.9
GSMUA_Achr7P14790_001 Banana cytosol 69.12 78.12
TraesCS3D01G244500.1 Wheat cytosol 77.88 77.52
TraesCS3A01G247000.1 Wheat cytosol 77.88 77.52
Solyc07g055290.2.1 Tomato plastid 75.58 75.23
OQU87300 Sorghum cytosol 74.65 73.97
Zm00001d043935_P001 Maize cytosol 74.65 73.64
Solyc01g103380.2.1 Tomato nucleus 68.66 69.63
Solyc06g005810.2.1 Tomato cytosol, unclear 68.2 68.52
Solyc06g076450.2.1 Tomato plastid 67.74 68.37
Solyc10g045550.1.1 Tomato nucleus 66.82 67.44
Solyc05g052900.2.1 Tomato cytosol 65.44 66.05
Solyc03g079900.2.1 Tomato cytosol 64.98 65.58
GSMUA_Achr7P10970_001 Banana cytosol 67.74 58.1
Solyc01g086850.2.1 Tomato cytosol 59.91 57.78
Solyc11g010100.1.1 Tomato cytosol 58.99 57.14
Solyc04g012180.2.1 Tomato cytosol, unclear 58.06 56.76
Solyc10g079030.1.1 Tomato plastid 58.53 56.19
Solyc03g064020.2.1 Tomato cytosol 56.68 54.91
Solyc01g096220.2.1 Tomato plastid 59.45 53.09
TraesCS3B01G272300.1 Wheat cytosol 77.88 48.84
Protein Annotations
MapMan:22.8.1.1Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005768GO:GO:0016787UniProt:K4DCG6InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF649SMART:SM00173SMART:SM00174SMART:SM00175
SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseEnsemblPlantsGene:Solyc12g010790.1EnsemblPlants:Solyc12g010790.1.1
TIGRFAMs:TIGR00231UniParc:UPI0002769FEC::::
Description
No Description!
Coordinates
chr12:-:3711266..3713629
Molecular Weight (calculated)
24047.3 Da
IEP (calculated)
5.401
GRAVY (calculated)
-0.253
Length
217 amino acids
Sequence
(BLAST)
001: MGAYRSDDDY DYLFKVVLIG DSGVGKSNLL SRFTRSEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDSSIV IMLVGNKADL RHLRAVSTED AQAFAEKEST FFMETSALES MNVESAFTEV LTQIHRVVSR KALEVGDDPA AVPKGQTINV
201: GGKDDVSEVK KAGCCSA
Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.