Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G038200.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | HORVU3Hr1G038200.3 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 100.0 | 100.0 |
| TraesCS5D01G188900.1 | Wheat | cytosol | 99.07 | 99.07 |
| TraesCS5B01G182200.1 | Wheat | cytosol | 98.61 | 98.61 |
| OQU89311 | Sorghum | cytosol | 98.15 | 98.15 |
| Os09t0327100-01 | Rice | plasma membrane | 98.15 | 98.15 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 93.06 | 92.63 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 92.59 | 92.17 |
| PGSC0003DMT400024319 | Potato | cytosol | 92.59 | 92.17 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 92.59 | 92.17 |
| AT5G60860.1 | Thale cress | cytosol | 92.13 | 91.71 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 91.67 | 91.24 |
| PGSC0003DMT400020208 | Potato | cytosol | 91.2 | 90.78 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 90.74 | 90.32 |
| KRH25681 | Soybean | cytosol | 90.28 | 89.86 |
| KRH50137 | Soybean | cytosol, mitochondrion | 90.28 | 89.86 |
| KRH30863 | Soybean | cytosol | 89.81 | 89.4 |
| KRH55839 | Soybean | endoplasmic reticulum | 89.81 | 89.4 |
| AT3G15060.1 | Thale cress | cytosol | 89.35 | 88.94 |
| CDX75804 | Canola | cytosol | 89.35 | 88.53 |
| CDX82451 | Canola | cytosol | 89.35 | 88.53 |
| Solyc12g014080.1.1 | Tomato | cytosol | 88.89 | 88.48 |
| Bra032914.1-P | Field mustard | cytosol | 88.89 | 88.07 |
| Bra001581.1-P | Field mustard | cytosol | 88.89 | 88.07 |
| CDY34094 | Canola | cytosol | 88.89 | 88.07 |
| CDY30818 | Canola | cytosol | 88.89 | 88.07 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 88.43 | 88.02 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 88.43 | 88.02 |
| Bra010860.1-P | Field mustard | cytosol | 87.04 | 87.44 |
| CDX90160 | Canola | cytosol | 87.04 | 87.44 |
| CDX94631 | Canola | cytosol | 87.96 | 87.16 |
| CDY35757 | Canola | cytosol | 87.96 | 87.16 |
| Bra030105.1-P | Field mustard | cytosol | 87.96 | 87.16 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 87.04 | 87.04 |
| CDY15659 | Canola | cytosol | 87.5 | 86.7 |
| AT1G28550.1 | Thale cress | cytosol | 87.5 | 86.7 |
| AT2G33870.1 | Thale cress | cytosol | 86.11 | 85.32 |
| CDX79548 | Canola | cytosol | 77.78 | 85.28 |
| PGSC0003DMT400033395 | Potato | cytosol | 85.19 | 85.19 |
| PGSC0003DMT400058784 | Potato | cytosol | 84.72 | 85.12 |
| Solyc03g006270.2.1 | Tomato | cytosol | 84.72 | 84.72 |
| Solyc10g008840.2.1 | Tomato | cytosol | 84.26 | 84.65 |
| Bra021589.1-P | Field mustard | cytosol | 85.19 | 84.4 |
| CDY20100 | Canola | cytosol | 85.19 | 84.4 |
| Bra022959.1-P | Field mustard | cytosol | 84.72 | 83.94 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 71.3 | 80.21 |
| AT4G18430.1 | Thale cress | cytosol | 80.56 | 80.18 |
| CDY01540 | Canola | cytosol | 80.09 | 79.72 |
| CDY55638 | Canola | cytosol | 80.09 | 79.72 |
| KRH27001 | Soybean | cytosol, endoplasmic reticulum | 80.09 | 79.36 |
| Bra012597.1-P | Field mustard | cytosol | 79.63 | 79.26 |
| CDX76522 | Canola | cytosol | 79.17 | 78.8 |
| Bra021009.1-P | Field mustard | cytosol | 78.7 | 78.34 |
| KRH22324 | Soybean | cytosol, endoplasmic reticulum | 78.7 | 77.98 |
| CDY60884 | Canola | cytosol | 74.07 | 71.75 |
| HORVU7Hr1G089120.1 | Barley | cytosol | 81.02 | 70.85 |
| HORVU5Hr1G114250.1 | Barley | cytosol, plasma membrane | 66.67 | 66.98 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 67.13 | 64.44 |
| HORVU1Hr1G033390.2 | Barley | cytosol | 62.5 | 62.21 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 68.06 | 58.1 |
| HORVU3Hr1G071740.1 | Barley | plastid | 76.85 | 58.04 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 52.31 | 51.13 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 50.46 | 47.81 |
| HORVU1Hr1G034400.4 | Barley | plasma membrane | 58.8 | 46.52 |
| HORVU5Hr1G120210.4 | Barley | plastid | 67.13 | 45.89 |
| HORVU3Hr1G085710.1 | Barley | cytosol, plastid | 66.2 | 45.54 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EMBL:AK363574 | EMBL:AK371399 | UniProt:F2DI56 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| EnsemblPlantsGene:HORVU5Hr1G056470 | EnsemblPlants:HORVU5Hr1G056470.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF346 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00016F308D | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DI56]
Coordinates
chrchr5H:+:442005845..442009252
Molecular Weight (calculated)
24031.4 Da
IEP (calculated)
5.803
GRAVY (calculated)
-0.238
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRAEDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIRVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLKEL RDHTDANIVI MLVGNKADLR HLRAVSVEDA KAFAERESTF FMETSALEAM NVENAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: GKDDVSAVKK AGCCSS
101: ENVERWLKEL RDHTDANIVI MLVGNKADLR HLRAVSVEDA KAFAERESTF FMETSALEAM NVENAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: GKDDVSAVKK AGCCSS
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.