CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	KXG32246	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0327100-01	Rice	plasma membrane	100.0	100.0
TraesCS5A01G184100.1	Wheat	golgi, plastid	98.15	98.15
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	98.15	98.15
TraesCS5D01G188900.1	Wheat	cytosol	97.69	97.69
TraesCS5B01G182200.1	Wheat	cytosol	97.22	97.22
EES19950	Sorghum	cytosol	93.52	93.52
VIT_10s0003g00550.t01	Wine grape	cytosol	92.59	92.17
PGSC0003DMT400024319	Potato	cytosol	92.13	91.71
Solyc07g053480.2.1	Tomato	cytosol, plastid	92.13	91.71
KRH20359	Soybean	cytosol, endoplasmic reticulum	92.13	91.71
AT5G60860.1	Thale cress	cytosol	91.67	91.24
VIT_19s0014g01820.t01	Wine grape	cytosol	91.67	91.24
PGSC0003DMT400020208	Potato	cytosol	91.2	90.78
KRH50137	Soybean	cytosol, mitochondrion	90.74	90.32
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	90.74	90.32
KRH25681	Soybean	cytosol	90.28	89.86
KRH55839	Soybean	endoplasmic reticulum	89.81	89.4
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.35	88.94
KRH30863	Soybean	cytosol	89.35	88.94
Solyc12g014080.1.1	Tomato	cytosol	88.43	88.02
CDX82451	Canola	cytosol	88.43	87.61
CDX75804	Canola	cytosol	88.43	87.61
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	87.96	87.56
AT3G15060.1	Thale cress	cytosol	87.96	87.56
Bra001581.1-P	Field mustard	cytosol	87.96	87.16
CDX90160	Canola	cytosol	86.57	86.98
Bra010860.1-P	Field mustard	cytosol	86.57	86.98
CDY30818	Canola	cytosol	87.5	86.7
CDY34094	Canola	cytosol	87.5	86.7
CDY35757	Canola	cytosol	87.5	86.7
Bra032914.1-P	Field mustard	cytosol	87.5	86.7
VIT_12s0028g02650.t01	Wine grape	cytosol	86.57	86.57
CDX94631	Canola	cytosol	86.57	85.78
Bra030105.1-P	Field mustard	cytosol	86.57	85.78
CDY15659	Canola	cytosol	86.11	85.32
AT1G28550.1	Thale cress	cytosol	86.11	85.32
AT2G33870.1	Thale cress	cytosol	85.65	84.86
CDX79548	Canola	cytosol	77.31	84.77
PGSC0003DMT400033395	Potato	cytosol	84.72	84.72
PGSC0003DMT400058784	Potato	cytosol	84.26	84.65
Solyc03g006270.2.1	Tomato	cytosol	84.26	84.26
Solyc10g008840.2.1	Tomato	cytosol	83.8	84.19
Bra021589.1-P	Field mustard	cytosol	84.72	83.94
CDY20100	Canola	cytosol	84.72	83.94
Bra022959.1-P	Field mustard	cytosol	83.8	83.03
EER89913	Sorghum	cytosol	81.48	81.11
GSMUA_Achr7P14790_001	Banana	cytosol	71.3	80.21
AT4G18430.1	Thale cress	cytosol	80.56	80.18
KRH27001	Soybean	cytosol, endoplasmic reticulum	80.56	79.82
CDY55638	Canola	cytosol	80.09	79.72
CDY01540	Canola	cytosol	80.09	79.72
Bra012597.1-P	Field mustard	cytosol	79.63	79.26
CDX76522	Canola	cytosol	79.17	78.8
KRH22324	Soybean	cytosol, endoplasmic reticulum	79.17	78.44
Bra021009.1-P	Field mustard	cytosol	78.7	78.34
OQU87300	Sorghum	cytosol	77.78	76.71
EES19812	Sorghum	cytosol	75.0	73.64
CDY60884	Canola	cytosol	74.07	71.75
KXG37238	Sorghum	cytosol	66.2	66.51
EER98344	Sorghum	cytosol	68.52	66.37
OQU77196	Sorghum	cytosol	67.13	65.91
EES17935	Sorghum	cytosol	62.04	61.75
EER92725	Sorghum	cytosol	60.19	59.91
OQU91938	Sorghum	cytosol	59.72	59.45
EER90540	Sorghum	cytosol	64.35	58.9
EER96479	Sorghum	cytosol	61.57	58.85
GSMUA_Achr7P10970_001	Banana	cytosol	68.52	58.5
EER90389	Sorghum	cytosol	44.91	46.41
EER97073	Sorghum	cytosol	53.7	45.31

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8067717	UniProt:A0A1W0W4P3	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:OQU89311
ProteinID:OQU89311	ProteinID:OQU89311.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF346	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	EnsemblPlantsGene:SORBI_3002G172401	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00003B06CC	RefSeq:XP_002462228.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:54560001..54562181

Molecular Weight (calculated)

24022.4 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.260

Length

216 amino acids

Sequence
(BLAST)

001: MAYRAEDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIRVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLKEL RDHTDANIVI MLVGNKADLR HLRAVSVEDA KGFAERESTF FMETSALESM NVESAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: GKDDVSAVKK SGCCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.