CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89059
EES12769
KXG26318
OQU85574
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	KXG26318	AT2G23420.1	21798944
AT1G09630.1	OQU90665	AT2G23420.1	21798944
AT1G09630.1	EER89059	AT4G17720.1	21798944
AT1G09630.1	EES12769	AT4G17720.1	21798944
AT1G09630.1	OQU85574	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0105100-01	Rice	golgi, plasma membrane	94.55	94.55
HORVU1Hr1G001920.2	Barley	cytosol	89.09	87.11
TraesCS1D01G013300.1	Wheat	cytosol	88.18	87.0
TraesCS1B01G018900.1	Wheat	cytosol	88.18	87.0
TraesCS1A01G015400.1	Wheat	cytosol	87.27	86.1
GSMUA_Achr2P05630_001	Banana	cytosol	83.18	85.12
GSMUA_Achr6P28910_001	Banana	cytosol	82.73	83.87
Solyc01g103380.2.1	Tomato	nucleus	80.45	82.71
PGSC0003DMT400064102	Potato	cytosol	80.45	82.71
VIT_12s0035g01140.t01	Wine grape	extracellular	79.55	81.4
Bra020006.1-P	Field mustard	cytosol	79.09	80.18
CDY50888	Canola	cytosol	79.09	80.18
CDX93495	Canola	cytosol	78.64	79.72
KRH26288	Soybean	endoplasmic reticulum	78.18	79.26
Solyc10g045550.1.1	Tomato	nucleus	77.27	79.07
AT1G09630.1	Thale cress	cytosol	77.73	78.8
KRH06049	Soybean	endoplasmic reticulum	77.27	78.7
GSMUA_Achr6P18430_001	Banana	cytosol	73.64	72.0
KXG37238	Sorghum	cytosol	70.0	71.63
EER98344	Sorghum	cytosol	71.36	70.4
EER89913	Sorghum	cytosol	66.82	67.74
OQU89311	Sorghum	cytosol	65.91	67.13
PGSC0003DMT400045950	Potato	cytosol	77.73	67.06
EES19950	Sorghum	cytosol	65.45	66.67
EES19812	Sorghum	cytosol	65.91	65.91
EES17935	Sorghum	cytosol	61.82	62.67
OQU87300	Sorghum	cytosol	61.82	62.1
EER90540	Sorghum	cytosol	64.09	59.75
OQU91938	Sorghum	cytosol	57.73	58.53
EER92725	Sorghum	cytosol	57.27	58.06
EER96479	Sorghum	cytosol	57.27	55.75
EER90389	Sorghum	cytosol	43.64	45.93
EER97073	Sorghum	cytosol	51.36	44.14

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8066597	UniProt:C5YY06	ProteinID:EES17533.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	EnsemblPlants:OQU77196
ProteinID:OQU77196	ProteinID:OQU77196.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3009G003800	SUPFAM:SSF52540	unigene:Sbi.21060	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A88C26	RefSeq:XP_002439103.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:361196..364247

Molecular Weight (calculated)

23995.3 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.277

Length

220 amino acids

Sequence
(BLAST)

001: MAGRRAEEEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFCL ESKSTIGVEF ATRTLHVEGK IIKAQIWDTA GQERYRAITS AYYRGALGAV LVYDVSKPTT
101: FENISRWLKE LRDHADSNIR IMLVGNKTDL RHLRAVATDD AQSFAEAEGL SYIETSALEA TNVEEAFQLI LGDIYRAISK KPVASDESGQ GAAGGVKEGK
201: TINVATGGDA AAEKKQCCSA

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.