CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER93195
EES10859
EES18842
EES19652
EES19950
OQU87300
OQU88745
OQU89311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	EES10859	AT3G11730.1	21798944
AT4G17720.1	EES18842	AT3G11730.1	21798944
AT4G17720.1	EER93195	AT3G46060.1	21798944
AT4G17720.1	EES19652	AT3G46060.1	21798944
AT4G17720.1	OQU88745	AT3G46060.1	21798944
AT4G17720.1	EER87703	AT4G25680.1	21798944
AT4G17720.1	EES19950	AT5G60860.1	21798944
AT4G17720.1	OQU87300	AT5G60860.1	21798944
AT4G17720.1	OQU89311	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054082_P001	Maize	cytosol	62.66	86.57
Zm00001d051524_P002	Maize	nucleus	88.24	85.61
Zm00001d046215_P001	Maize	cytosol	68.54	83.75
Zm00001d046992_P001	Maize	cytosol	67.77	81.04
Zm00001d014267_P001	Maize	nucleus	85.93	79.62
Os04t0624800-01	Rice	nucleus	62.66	65.16
TraesCS6D01G249000.1	Wheat	nucleus, plastid	62.15	63.61
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	62.4	61.46
TraesCS6A01G265600.1	Wheat	extracellular	61.89	60.96
Solyc03g097110.2.1	Tomato	nucleus	40.92	57.55
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	40.92	57.55
EES12769	Sorghum	cytosol	45.52	56.69
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	40.15	56.68
CDY01476	Canola	cytosol	20.72	56.64
VIT_02s0012g01860.t01	Wine grape	cytosol	39.64	54.96
KRH74377	Soybean	endoplasmic reticulum	39.13	54.84
EER89059	Sorghum	cytosol	37.6	54.65
KRH39571	Soybean	nucleus	39.13	54.64
Solyc08g076530.2.1	Tomato	plastid	38.11	53.02
PGSC0003DMT400038377	Potato	cytosol	38.11	53.02
GSMUA_Achr8P14700_001	Banana	plastid	40.41	51.8
CDX70721	Canola	cytosol	34.53	51.72
CDX78713	Canola	cytosol	34.53	51.72
Bra006373.1-P	Field mustard	cytosol	34.53	51.72
AT5G16840.2	Thale cress	nucleus	34.27	51.54
Bra023585.1-P	Field mustard	nucleus	32.99	50.99
CDX69415	Canola	cytosol	33.76	50.77
Bra008589.1-P	Field mustard	cytosol	34.02	50.76
CDY01477	Canola	cytosol	39.13	50.49
Bra040177.1-P	Field mustard	nucleus	38.36	49.67
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	35.29	49.64
Bra012646.1-P	Field mustard	nucleus	39.39	49.36
CDX90453	Canola	cytosol	38.87	49.19
CDX78795	Canola	nucleus	37.85	48.84
CDY60787	Canola	nucleus	37.6	48.51
AT5G46870.1	Thale cress	nucleus	36.32	48.14
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	38.36	47.92
KRH24024	Soybean	nucleus	35.29	47.26
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	35.04	46.76
CDY01473	Canola	nucleus	23.53	46.46
CDX90455	Canola	cytosol	23.02	43.27
Bra012647.1-P	Field mustard	cytosol	23.02	43.27
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.06	42.34
Bra024988.1-P	Field mustard	vacuole	36.06	42.34
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.06	42.09
CDY16974	Canola	plastid	34.02	41.82
CDX85485	Canola	plastid	33.25	41.27
PGSC0003DMT400069547	Potato	nucleus	35.29	40.59
EER93456	Sorghum	cytosol	26.85	38.04
Solyc06g072770.2.1	Tomato	nucleus	34.53	37.09
EES09901	Sorghum	plastid	26.6	33.77
EES12950	Sorghum	cytosol, nucleus, plastid	20.46	32.79
CDY38083	Canola	nucleus	32.74	30.55

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8073181	UniProt:A0A1Z5RPA2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU85574
ProteinID:OQU85574	ProteinID:OQU85574.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3004G273600	SUPFAM:SSF54928	UniParc:UPI0001A85E59
RefSeq:XP_002452708.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:61735552..61738683

Molecular Weight (calculated)

42909.7 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.598

Length

391 amino acids

Sequence
(BLAST)

001: MTGTVKVHNV SLKATEQEIS EFFSFSGEIV HVELQSCDER SQFAYITFRD NQGAERAMLL TGATIEHMAV IITPATDYKL PASVLADLES KNTGGMEFAL
101: QKAEDIVSSM LAKGFVLGMD AVEKAKTFDE KHQLTSTATA KVASLDKTMG LSQKFNTGTL VVNEKMKEMD EKYQVAEKTK SALAAAEQTV STASSAIMSN
201: RYILTGAAWV TDAYNKVATT TTDVSTKTKE RVMAEWEGAN HSGETAKVDS LESSEADEEE CKRHEDDSTN NFIVDSPEMT CQENEHQVGE RQMTNVEENK
301: NHEGEIAVAH MQENTETAEN PSCHESEVSK ANAHDSILMT EQSEREHKQP EDEFAKTHVP GSPVTIPVTM STIDRNSSNS PNKPDSAEGF L

Best Arabidopsis Sequence Match ( AT5G16840.2 )
(BLAST)

001: MASQVRSVKV GNLSSGATEH DIKEFFSFSG EVESIDIQSS NEHSAYVTFK ETQGAETAVL LSGASIADQS VIIELAPNYS PPAAPHAETQ SSGAESVVQK
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKH GFTSTATAGV ASLDQKIGLS QKLTAGTSLV NEKIKAVDQN FQVTERTKSV YAAAEQTVSS AGSAVMKNRY
201: VLTGVSWAAG AFNRVAQAAG EVGQKTKEKV EAEQPSQPAQ SQQQLPEGYS PIHSSEYSKN

Arabidopsis Description

BPA1binding partner of acd11 1 [Source:TAIR;Acc:AT5G16840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.