CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER93195
EES10859
EES18842
EES19652
EES19950
OQU87300
OQU88745
OQU89311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	EES10859	AT3G11730.1	21798944
AT4G17720.1	EES18842	AT3G11730.1	21798944
AT4G17720.1	EER93195	AT3G46060.1	21798944
AT4G17720.1	EES19652	AT3G46060.1	21798944
AT4G17720.1	OQU88745	AT3G46060.1	21798944
AT4G17720.1	EER87703	AT4G25680.1	21798944
AT4G17720.1	EES19950	AT5G60860.1	21798944
AT4G17720.1	OQU87300	AT5G60860.1	21798944
AT4G17720.1	OQU89311	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	92.04	92.04
Zm00001d002475_P001	Maize	extracellular	89.49	89.49
Zm00001d031612_P001	Maize	cytosol	64.33	84.17
Zm00001d026150_P001	Maize	cytosol	64.33	84.17
Os04t0594400-01	Rice	plasma membrane	82.8	82.8
TraesCS2D01G444000.1	Wheat	extracellular	82.48	82.22
TraesCS2A01G445100.1	Wheat	extracellular	82.48	81.7
TraesCS2B01G466100.1	Wheat	extracellular	81.85	81.07
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	70.38	68.0
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	55.73	63.18
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	55.41	62.59
Solyc03g097110.2.1	Tomato	nucleus	55.1	62.23
VIT_02s0012g01860.t01	Wine grape	cytosol	55.73	62.06
PGSC0003DMT400038377	Potato	cytosol	55.41	61.92
Solyc08g076530.2.1	Tomato	plastid	55.1	61.57
KRH74377	Soybean	endoplasmic reticulum	54.14	60.93
KRH39571	Soybean	nucleus	53.82	60.36
EER89059	Sorghum	cytosol	51.27	59.85
GSMUA_Achr8P14700_001	Banana	plastid	56.69	58.36
CDY01476	Canola	cytosol	26.43	58.04
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	50.32	56.83
AT5G46870.1	Thale cress	nucleus	51.59	54.92
CDY01477	Canola	cytosol	52.87	54.79
CDX90453	Canola	cytosol	53.82	54.69
Bra012646.1-P	Field mustard	nucleus	54.14	54.49
Bra040177.1-P	Field mustard	nucleus	52.23	54.3
CDX78795	Canola	nucleus	52.23	54.13
CDY60787	Canola	nucleus	51.59	53.47
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	53.18	53.35
CDX78713	Canola	cytosol	43.31	52.11
CDX70721	Canola	cytosol	43.31	52.11
Bra006373.1-P	Field mustard	cytosol	43.31	52.11
AT5G16840.2	Thale cress	nucleus	42.99	51.92
Bra023585.1-P	Field mustard	nucleus	41.72	51.78
CDX69415	Canola	cytosol	42.36	51.15
KRH24024	Soybean	nucleus	47.45	51.03
Bra008589.1-P	Field mustard	cytosol	42.04	50.38
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	46.18	49.49
Bra024988.1-P	Field mustard	vacuole	51.91	48.95
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.91	48.66
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.59	48.65
CDY01473	Canola	nucleus	30.57	48.48
Bra012647.1-P	Field mustard	cytosol	30.57	46.15
CDX90455	Canola	cytosol	30.57	46.15
OQU85574	Sorghum	nucleus	56.69	45.52
PGSC0003DMT400069547	Potato	nucleus	47.77	44.12
CDY16974	Canola	plastid	42.68	42.14
EER93456	Sorghum	cytosol	36.94	42.03
CDX85485	Canola	plastid	41.72	41.59
Solyc06g072770.2.1	Tomato	nucleus	48.09	41.48
EES09901	Sorghum	plastid	35.03	35.71
EES12950	Sorghum	cytosol, nucleus, plastid	26.11	33.61
CDY38083	Canola	nucleus	41.4	31.03

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8063905	UniProt:C5YF27	EnsemblPlants:EES12769	ProteinID:EES12769
ProteinID:EES12769.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G200000	SUPFAM:SSF54928	unigene:Sbi.19695
UniParc:UPI0001A8740B	RefSeq:XP_002448441.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:55176117..55179404

Molecular Weight (calculated)

33216.3 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.143

Length

314 amino acids

Sequence
(BLAST)

001: MAASTLSTVK VSNVSLKAAQ RDIKEFFSFS GDIVHVEMQS GDELSQVAYI TFKDNQGAET AMLLTGATIV YMAVIVTPAN DYELPASVLA ALEPKDTKPS
101: ALQKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYQVSEK TKSALAAAEQ SVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVT SAANDVGAKA KEKIAVEQEH KNAEAGPAQA NISEFPAAPR ELDSEFTKIH VAETPEEIPV STVTVPAVTE EELSEASPPA
301: DVPTKPEAAQ GLVL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.