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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • mitochondrion 2
  • nucleus 1
  • plastid 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003588_P002
Zm00001d003789_P002
Zm00001d005215_P001
Zm00001d009572_P001
Zm00001d010538_P005
Zm00001d034638_P001
Zm00001d035741_P002
Zm00001d038380_P001
Zm00001d039016_P001
Zm00001d043935_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17720.1 Zm00001d003588_P002 AT3G11730.1 21798944
AT4G17720.1 Zm00001d003789_P002 AT3G11730.1 21798944
AT4G17720.1 Zm00001d005215_P001 AT3G11730.1 21798944
AT4G17720.1 Zm00001d035741_P002 AT3G11730.1 21798944
AT4G17720.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT4G17720.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT4G17720.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT4G17720.1 Zm00001d045580_P001 AT4G25680.1 21798944
AT4G17720.1 Zm00001d009572_P001 AT5G60860.1 21798944
AT4G17720.1 Zm00001d039016_P001 AT5G60860.1 21798944
AT4G17720.1 Zm00001d043935_P001 AT5G60860.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES12769 Sorghum cytosol 89.49 89.49
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 89.17 89.17
TraesCS2D01G444000.1 Wheat extracellular 80.89 80.63
Os04t0594400-01 Rice plasma membrane 80.57 80.57
Zm00001d031612_P001 Maize cytosol 61.47 80.42
Zm00001d026150_P001 Maize cytosol 61.47 80.42
TraesCS2A01G445100.1 Wheat extracellular 80.89 80.13
TraesCS2B01G466100.1 Wheat extracellular 79.94 79.18
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 67.52 65.23
VIT_16s0039g01860.t01 Wine grape cytosol, nucleus, plastid 55.73 63.18
PGSC0003DMT400008196 Potato cytosol, mitochondrion, nucleus 54.78 61.87
VIT_02s0012g01860.t01 Wine grape cytosol 55.41 61.7
PGSC0003DMT400038377 Potato cytosol 55.1 61.57
Solyc03g097110.2.1 Tomato nucleus 54.46 61.51
Solyc08g076530.2.1 Tomato plastid 54.78 61.21
KRH74377 Soybean endoplasmic reticulum 53.82 60.57
KRH39571 Soybean nucleus 53.5 60.0
CDY01476 Canola cytosol 26.43 58.04
GSMUA_Achr8P14700_001 Banana plastid 55.41 57.05
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 50.32 56.83
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 49.36 55.76
CDY01477 Canola cytosol 52.87 54.79
AT5G46870.1 Thale cress nucleus 51.27 54.58
CDX90453 Canola cytosol 53.5 54.37
Bra040177.1-P Field mustard nucleus 52.23 54.3
Bra012646.1-P Field mustard nucleus 53.82 54.17
CDX78795 Canola nucleus 52.23 54.13
CDY60787 Canola nucleus 51.91 53.8
AT4G17720.1 Thale cress cytosol, nucleus, plastid 53.18 53.35
Zm00001d054082_P001 Maize cytosol 47.77 53.0
Bra023585.1-P Field mustard nucleus 42.36 52.57
AT5G16840.2 Thale cress nucleus 43.31 52.31
Bra006373.1-P Field mustard cytosol 43.31 52.11
CDX70721 Canola cytosol 43.31 52.11
CDX78713 Canola cytosol 43.31 52.11
Zm00001d033766_P002 Maize cytosol, nucleus, plastid 46.18 51.24
KRH24024 Soybean nucleus 47.45 51.03
CDX69415 Canola cytosol 42.04 50.77
Zm00001d013419_P001 Maize cytosol, nucleus, plastid 45.22 50.18
Bra008589.1-P Field mustard cytosol 41.72 50.0
Bra024988.1-P Field mustard vacuole 51.59 48.65
CDX77703 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 51.59 48.36
CDY33486 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 51.27 48.35
CDY01473 Canola nucleus 30.25 47.98
Zm00001d046992_P001 Maize cytosol 49.04 47.09
Bra012647.1-P Field mustard cytosol 30.89 46.63
CDX90455 Canola cytosol 30.89 46.63
Zm00001d035920_P002 Maize extracellular, vacuole 50.64 45.95
PGSC0003DMT400069547 Potato nucleus 47.77 44.12
Zm00001d051524_P002 Maize nucleus 54.46 42.43
CDX85485 Canola plastid 42.36 42.22
CDY16974 Canola plastid 42.36 41.82
Solyc06g072770.2.1 Tomato nucleus 48.09 41.48
Zm00001d013271_P003 Maize cytosol 35.67 39.86
Zm00001d014267_P001 Maize nucleus 53.5 39.81
Zm00001d046215_P001 Maize cytosol 37.58 36.88
Zm00001d026425_P003 Maize cytosol 27.07 34.84
Zm00001d053093_P001 Maize cytosol, plastid 34.71 34.38
Zm00001d002122_P007 Maize cytosol, nucleus, plastid 25.48 32.13
CDY38083 Canola nucleus 42.04 31.5
Zm00001d033453_P001 Maize cytosol 25.48 23.81
Protein Annotations
EntrezGene:100282771Gene3D:3.30.70.330MapMan:35.1UniProt:B6TB94EMBL:BT061154EMBL:EU962259
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sfProteinID:ONM14506.1PFAM:PF00076PFscan:PS50102PANTHER:PTHR44136PANTHER:PTHR44136:SF4
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI000182D005EnsemblPlantsGene:Zm00001d002475
EnsemblPlants:Zm00001d002475_P001EnsemblPlants:Zm00001d002475_T001SEG:seg:::
Description
Binding partner of ACD11 1
Coordinates
chr2:+:13572658..13576059
Molecular Weight (calculated)
33271.3 Da
IEP (calculated)
5.263
GRAVY (calculated)
-0.250
Length
314 amino acids
Sequence
(BLAST)
001: MATSMLSTVK VSNVSLKAAQ RDIKEFFSFS GDIVHVEMQS FDELSQVAYI TFKDKQGAET AMLLTGATIV DMAVIVTPAN DYELPSSVLA ALEPKDTKPS
101: ALQKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYQVSEK TKSALAAAEH SVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVT SAANEAGAKA KEKIAVEQEH KNAEGGPAQA NISETHEAHR GLDGGFSRLH DSETPEDIPI STASVPAVTD EEPSKASPPA
301: GVPEKPEAAH ELVL
Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.