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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68365
CDX73855
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDX99430
CDY17034
CDY23649
CDY30926
CDY47592
CDY47919
CDY49480
CDY52126
CDY56593
CDY62557
CDY64916
CDY66007
CDY67628
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17720.1 CDY17034 AT1G47260.1 21798944
AT4G17720.1 CDY23649 AT1G47260.1 21798944
AT4G17720.1 CDY47592 AT1G47260.1 21798944
AT4G17720.1 CDY67628 AT1G47260.1 21798944
AT4G17720.1 CDX73855 AT3G11730.1 21798944
AT4G17720.1 CDY47919 AT3G11730.1 21798944
AT4G17720.1 CDY56593 AT3G11730.1 21798944
AT4G17720.1 CDX68365 AT3G46060.1 21798944
AT4G17720.1 CDX77855 AT3G46060.1 21798944
AT4G17720.1 CDX86045 AT3G46060.1 21798944
AT4G17720.1 CDX99131 AT3G46060.1 21798944
AT4G17720.1 CDY30926 AT3G46060.1 21798944
AT4G17720.1 CDY71506 AT3G46060.1 21798944
AT4G17720.1 CDX99430 AT4G18800.1 21798944
AT4G17720.1 CDY62557 AT4G18800.1 21798944
AT4G17720.1 CDY64916 AT4G18800.1 21798944
AT4G17720.1 CDX89402 AT4G25680.1 21798944
AT4G17720.1 CDX89404 AT4G25680.1 21798944
AT4G17720.1 CDX94426 AT4G25680.1 21798944
AT4G17720.1 CDX94429 AT4G25680.1 21798944
AT4G17720.1 CDY49480 AT4G25680.1 21798944
AT4G17720.1 CDY66007 AT4G25680.1 21798944
AT4G17720.1 CDY52126 AT5G58750.1 21798944
AT4G17720.1 CDY67905 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78795 Canola nucleus 97.69 97.69
Bra040177.1-P Field mustard nucleus 96.7 97.02
CDY01476 Canola cytosol 42.24 89.51
CDY01477 Canola cytosol 86.8 86.8
CDX90453 Canola cytosol 88.12 86.41
AT4G17720.1 Thale cress cytosol, nucleus, plastid 88.45 85.62
CDY01473 Canola nucleus 53.14 81.31
VIT_02s0012g01860.t01 Wine grape cytosol 64.69 69.5
KRH39571 Soybean nucleus 63.37 68.57
KRH74377 Soybean endoplasmic reticulum 62.71 68.1
GSMUA_Achr9P23330_001 Banana nucleus, peroxisome, plastid 54.79 68.03
Solyc08g076530.2.1 Tomato plastid 63.04 67.97
PGSC0003DMT400038377 Potato cytosol 62.71 67.62
GSMUA_AchrUn_... Banana cytosol, extracellular, nucleus 61.39 66.91
CDY33486 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 71.29 64.86
CDX77703 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 71.62 64.78
CDX90455 Canola cytosol 43.89 63.94
HORVU7Hr1G003710.1 Barley cytosol 51.82 59.7
EER89059 Sorghum cytosol 52.48 59.11
Os06t0112400-01 Rice plasma membrane 50.83 59.0
TraesCS4A01G458600.1 Wheat cytosol, nucleus, plastid 51.16 58.27
TraesCS7D01G027100.1 Wheat plastid 51.16 58.27
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 52.48 57.19
CDX70721 Canola cytosol 48.51 56.32
CDX78713 Canola cytosol 48.51 56.32
CDX69415 Canola cytosol 46.53 54.23
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 48.84 53.24
GSMUA_Achr8P14700_001 Banana plastid 53.14 52.79
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 54.46 52.55
Os04t0594400-01 Rice plasma membrane 54.46 52.55
Zm00001d002475_P001 Maize extracellular 53.8 51.91
EES12769 Sorghum cytosol 53.47 51.59
TraesCS2D01G444000.1 Wheat extracellular 53.14 51.11
TraesCS2B01G466100.1 Wheat extracellular 52.81 50.47
TraesCS2A01G445100.1 Wheat extracellular 52.48 50.16
TraesCS7A01G030900.2 Wheat plastid 51.16 49.21
Zm00001d026150_P001 Maize cytosol 37.95 47.92
Zm00001d031612_P001 Maize cytosol 37.95 47.92
Zm00001d035920_P002 Maize extracellular, vacuole 52.81 46.24
Zm00001d054082_P001 Maize cytosol 42.57 45.58
CDY16974 Canola plastid 47.19 44.97
CDX85485 Canola plastid 46.2 44.44
CDY01872 Canola cytosol, plastid 40.92 43.66
CDY38176 Canola cytosol 36.3 41.83
CDY25131 Canola cytosol, mitochondrion, nucleus, plastid 35.97 40.98
Os04t0624800-01 Rice nucleus 50.49 40.69
Zm00001d046992_P001 Maize cytosol 43.56 40.37
TraesCS6D01G249000.1 Wheat nucleus, plastid 50.49 40.05
CDX96860 Canola nucleus 32.01 39.75
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 42.24 39.38
CDY62016 Canola nucleus 30.36 39.32
CDY49093 Canola cytosol 31.68 39.18
CDX84035 Canola nucleus 31.35 38.93
TraesCS6A01G265600.1 Wheat extracellular 50.83 38.79
TraesCS6B01G292900.1 Wheat endoplasmic reticulum, extracellular 50.16 38.29
OQU85574 Sorghum nucleus 48.51 37.6
Zm00001d051524_P002 Maize nucleus 47.52 35.73
CDY60084 Canola cytosol, nucleus, plastid 8.58 34.21
CDY38083 Canola nucleus 46.2 33.41
Zm00001d014267_P001 Maize nucleus 46.53 33.41
Zm00001d046215_P001 Maize cytosol 33.0 31.25
CDX74287 Canola cytosol 25.74 30.95
CDX91958 Canola cytosol, nucleus, plastid 25.41 30.56
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:A0A078JA88UniProt:A0A078JA88EnsemblPlants:CDY60787ProteinID:CDY60787
ProteinID:CDY60787.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00030081001
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR44136
PANTHER:PTHR44136:SF5InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE4F9E
SEG:seg:::::
Description
BnaCnng36930DBnaCnng36930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA88]
Coordinates
chrLK033915:+:20413..22030
Molecular Weight (calculated)
32388.1 Da
IEP (calculated)
5.535
GRAVY (calculated)
-0.363
Length
303 amino acids
Sequence
(BLAST)
001: MTSVKVSNVS LGATERDLKE FFSFSGDILY LEMHSETERS KLAYVTFKDL QGAETAVLLS GATIVDSSVI VTMAPDYQLS PEALSSLEPK EDSSKSPRAS
101: VFRKAEDVVS SMLAKGFILG KDAIAKAKSV DEKHQLTSTA SARVASLDKK IGFTDKINTG TVAVGEKVRE VDHKYQVSEK TKSAIAAAEQ TVSNAGSAIM
201: KNRYVLTGAT WVTGAFSKVA KAAEEVGQMA KEKVGLAEEE DKRKVVDEFA RVHLSESPKA AAASSEGEES KFSESPEAKK NSEPQESPQV QQAPPPPVAP
301: ALP
Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.