Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G027100.1 | Wheat | plastid | 99.25 | 99.25 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 94.36 | 95.44 |
| Os06t0112400-01 | Rice | plasma membrane | 82.71 | 84.29 |
| EER89059 | Sorghum | cytosol | 84.96 | 84.01 |
| TraesCS7A01G030900.2 | Wheat | plastid | 98.5 | 83.17 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 84.59 | 80.94 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 67.67 | 73.77 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 68.42 | 65.47 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 83.83 | 64.45 |
| Solyc03g097110.2.1 | Tomato | nucleus | 65.04 | 62.23 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 64.29 | 61.51 |
| KRH39571 | Soybean | nucleus | 63.91 | 60.71 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 64.29 | 60.64 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 62.78 | 60.29 |
| KRH74377 | Soybean | endoplasmic reticulum | 63.16 | 60.22 |
| CDY01476 | Canola | cytosol | 31.58 | 58.74 |
| Bra023585.1-P | Field mustard | nucleus | 55.64 | 58.5 |
| AT5G16840.2 | Thale cress | nucleus | 56.77 | 58.08 |
| Solyc08g076530.2.1 | Tomato | plastid | 61.28 | 58.01 |
| CDX78713 | Canola | cytosol | 56.77 | 57.85 |
| Bra006373.1-P | Field mustard | cytosol | 56.77 | 57.85 |
| CDX69415 | Canola | cytosol | 56.02 | 57.31 |
| PGSC0003DMT400038377 | Potato | cytosol | 60.15 | 56.94 |
| Bra008589.1-P | Field mustard | cytosol | 56.02 | 56.87 |
| CDX70721 | Canola | cytosol | 55.64 | 56.7 |
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 55.26 | 51.76 |
| Bra040177.1-P | Field mustard | nucleus | 58.65 | 51.66 |
| CDY01477 | Canola | cytosol | 58.65 | 51.49 |
| CDY60787 | Canola | nucleus | 58.27 | 51.16 |
| CDX78795 | Canola | nucleus | 58.27 | 51.16 |
| Bra012646.1-P | Field mustard | nucleus | 59.4 | 50.64 |
| AT5G46870.1 | Thale cress | nucleus | 56.02 | 50.51 |
| CDX90453 | Canola | cytosol | 58.65 | 50.49 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 59.4 | 50.48 |
| CDX85485 | Canola | plastid | 56.39 | 47.62 |
| CDY16974 | Canola | plastid | 56.77 | 47.48 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 56.02 | 47.0 |
| KRH24024 | Soybean | nucleus | 51.5 | 46.92 |
| PGSC0003DMT400069547 | Potato | nucleus | 58.27 | 45.59 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 56.02 | 44.48 |
| Bra024988.1-P | Field mustard | vacuole | 55.64 | 44.44 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.26 | 44.14 |
| CDY01473 | Canola | nucleus | 32.71 | 43.94 |
| Solyc06g072770.2.1 | Tomato | nucleus | 59.02 | 43.13 |
| CDX90455 | Canola | cytosol | 33.46 | 42.79 |
| Bra012647.1-P | Field mustard | cytosol | 33.46 | 42.79 |
| TraesCS5A01G387800.1 | Wheat | cytosol | 43.61 | 42.65 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 54.14 | 36.27 |
| CDY38083 | Canola | nucleus | 55.64 | 35.32 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 31.58 | 34.43 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS4A01G458600 | EnsemblPlants:TraesCS4A01G458600.1 |
| InterPro:Vip1-like_RRM_plant | TIGR:cd12269 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:723806870..723810164
Molecular Weight (calculated)
28027.2 Da
IEP (calculated)
6.818
GRAVY (calculated)
-0.168
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATAPVEV PAAAPVRTVK VTNVSLSATE QDIKEFFSFS GDIEHVDMKS GDEWSQIAYV TFKDAQGAET ALLLSGATIV DLSVIIAPAP EYQPPPTASA
101: PLMNGTRVPV GGDNVVHKAE DVVSTMLARG FTLGKDAVGK AKSFDERHGF TSTATAKVAS IDKKIGLSEK FTMGTTVVNE KVKEMDQKFQ VSDKTKSALA
201: AAEQTVSNAG SAIMKNRYVF TSASWVTSAF GKVAKAATDV STMTKEKMSA EDQQKGSGGS SYTPIR
101: PLMNGTRVPV GGDNVVHKAE DVVSTMLARG FTLGKDAVGK AKSFDERHGF TSTATAKVAS IDKKIGLSEK FTMGTTVVNE KVKEMDQKFQ VSDKTKSALA
201: AAEQTVSNAG SAIMKNRYVF TSASWVTSAF GKVAKAATDV STMTKEKMSA EDQQKGSGGS SYTPIR
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.