Factsheet for HORVU7Hr1G003710.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G001910.9
HORVU1Hr1G072070.1
HORVU3Hr1G086830.7
HORVU5Hr1G056470.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	HORVU1Hr1G001910.9	AT3G11730.1	21798944
AT4G17720.1	HORVU1Hr1G072070.1	AT3G46060.1	21798944
AT4G17720.1	HORVU3Hr1G086830.7	AT3G46060.1	21798944
AT4G17720.1	HORVU5Hr1G112790.2	AT3G46060.1	21798944
AT4G17720.1	HORVU7Hr1G002080.2	AT4G25680.1	21798944
AT4G17720.1	HORVU5Hr1G056470.1	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G027100.1	Wheat	plastid	96.2	95.11
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	95.44	94.36
EER89059	Sorghum	cytosol	86.31	84.39
Os06t0112400-01	Rice	plasma membrane	83.65	84.29
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	86.31	81.65
TraesCS7A01G030900.2	Wheat	plastid	96.2	80.32
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	68.06	73.36
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	68.82	65.11
Zm00001d035920_P002	Maize	extracellular, vacuole	84.41	64.16
Solyc03g097110.2.1	Tomato	nucleus	65.4	61.87
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	64.64	61.15
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	63.5	60.29
KRH39571	Soybean	nucleus	63.88	60.0
KRH74377	Soybean	endoplasmic reticulum	63.12	59.5
Bra023585.1-P	Field mustard	nucleus	57.03	59.29
VIT_02s0012g01860.t01	Wine grape	cytosol	63.5	59.22
AT5G16840.2	Thale cress	nucleus	58.17	58.85
CDY01476	Canola	cytosol	31.56	58.04
Bra006373.1-P	Field mustard	cytosol	57.41	57.85
CDX78713	Canola	cytosol	57.41	57.85
CDX69415	Canola	cytosol	56.65	57.31
Bra008589.1-P	Field mustard	cytosol	56.65	56.87
CDX70721	Canola	cytosol	56.27	56.7
Solyc08g076530.2.1	Tomato	plastid	60.46	56.58
PGSC0003DMT400038377	Potato	cytosol	59.32	55.52
Bra040177.1-P	Field mustard	nucleus	60.46	52.65
CDY60787	Canola	nucleus	59.7	51.82
CDX78795	Canola	nucleus	59.7	51.82
CDY01477	Canola	cytosol	59.32	51.49
Bra012646.1-P	Field mustard	nucleus	60.08	50.64
AT5G46870.1	Thale cress	nucleus	56.65	50.51
CDX90453	Canola	cytosol	59.32	50.49
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	60.08	50.48
CDX85485	Canola	plastid	57.79	48.25
KRH24024	Soybean	nucleus	53.23	47.95
CDY16974	Canola	plastid	57.41	47.48
PGSC0003DMT400069547	Potato	nucleus	59.32	45.88
HORVU4Hr1G008120.3	Barley	plastid	56.27	45.4
CDY01473	Canola	nucleus	33.84	44.95
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	55.89	43.88
Bra024988.1-P	Field mustard	vacuole	55.51	43.84
Bra012647.1-P	Field mustard	cytosol	34.6	43.75
CDX90455	Canola	cytosol	34.6	43.75
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.13	43.54
Solyc06g072770.2.1	Tomato	nucleus	59.7	43.13
CDY38083	Canola	nucleus	57.03	35.8
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	30.8	32.27
HORVU5Hr1G095000.1	Barley	nucleus	43.35	30.89

Protein Annotations

EnsemblPlants:HORVU7Hr1G003710.1	EnsemblPlantsGene:HORVU7Hr1G003710	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000296E396	UniProt:M0XC90	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr7H:-:6621147..6626104

Molecular Weight (calculated)

27733.8 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.131

Length

263 amino acids

Sequence
(BLAST)

001: MATATVEVPV AAPVRSVKVT NVSLSATEQD IKEFFSFSGD IEHVDMKSGD EWSQVAYVTF KDAQGAETAL LLSGATIVDL SVIIAPAPEY QPPVTASAPL
101: SGTRVPVGGD NVVYKAEDVV STMLARGFTL GKDAVGKAKS FDERHGFTST ATAKVASIDK KIGLSEKFTL GTTVVNEKVK EMDQKFQVSD KTKSALAAAE
201: QTVSNAGSAI MKNRYVFTSA SWVTSAFGKV AKAATDVGTM TKEKMSAEEQ HKGSGGSSYT PIR

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.