Factsheet for HORVU4Hr1G008120.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	85.28	97.89
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	84.97	97.54
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	84.66	97.18
Os03t0713600-01	Rice	cytosol	76.38	87.68
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	76.07	87.63
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	74.23	85.51
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	76.38	84.98
VIT_01s0011g06050.t01	Wine grape	cytosol	54.29	62.32
HORVU7Hr1G003710.1	Barley	cytosol	45.4	56.27
KRH49688	Soybean	nucleus	51.23	53.87
KRH70369	Soybean	cytosol	50.92	53.55
AT1G67950.2	Thale cress	cytosol	44.48	51.97
CDY01872	Canola	cytosol, plastid	44.48	51.06
GSMUA_Achr4P03340_001	Banana	nucleus	23.31	41.53
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	25.77	33.47
HORVU5Hr1G095000.1	Barley	nucleus	36.5	32.25

Protein Annotations

EnsemblPlants:HORVU4Hr1G008120.3	EnsemblPlantsGene:HORVU4Hr1G008120	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR32343	PANTHER:PTHR32343:SF11	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B4732DA	UniProt:A0A287N3Q7	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:+:21744071..21748136

Molecular Weight (calculated)

35431.9 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.271

Length

326 amino acids

Sequence
(BLAST)

001: VHPRPPSPPP ADTAKFTTPP LVVLSRQIPG REARFPRDPA AAMEVRTVKV GNISLSASKR EITEFFSFSG DIEYVEMQSE TDWSQLAYVT FKDSQGADTA
101: VLLSGATIVD LHVIITPVEN YQLPPEARKQ LLGENSPSAE SAVRKAEDVV SSMMAKGFVL SKDALNMARS FDERHNIMST ATATVVSLDH QYGLSEKISL
201: GRAVVGSKVK EVDERYQVSE LTRSALAAAE QKASVAGSAL MGNQYVSAGA SWLTSAFGMV TKAAGDMGSM AKDKVDRAEE ERKAIMWEER NGLVSEYAKI
301: HLDDHSSWEP AVLPVESVDE QKLQAV

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.