Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 96.82 | 96.82 |
| OQU91106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 97.17 | 93.86 |
| Os03t0713600-01 | Rice | cytosol | 89.75 | 89.44 |
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 87.99 | 87.68 |
| TraesCS4B01G049100.1 | Wheat | cytosol, nucleus, plastid | 87.63 | 87.32 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 86.93 | 86.62 |
| HORVU4Hr1G008120.3 | Barley | plastid | 87.63 | 76.07 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 63.6 | 63.38 |
| KRH70369 | Soybean | cytosol | 59.72 | 54.52 |
| KRH49688 | Soybean | nucleus | 59.36 | 54.19 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 51.94 | 52.88 |
| AT1G67950.2 | Thale cress | cytosol | 50.88 | 51.61 |
| CDY01872 | Canola | cytosol, plastid | 50.53 | 50.35 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 53.36 | 48.09 |
| Zm00001d002475_P001 | Maize | extracellular | 51.24 | 46.18 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 51.59 | 42.2 |
| Zm00001d054082_P001 | Maize | cytosol | 42.05 | 42.05 |
| GSMUA_Achr4P03340_001 | Banana | nucleus | 26.86 | 41.53 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 46.29 | 41.32 |
| Zm00001d031612_P001 | Maize | cytosol | 34.98 | 41.25 |
| Zm00001d026150_P001 | Maize | cytosol | 34.98 | 41.25 |
| Zm00001d013271_P003 | Maize | cytosol | 40.28 | 40.57 |
| Zm00001d026425_P003 | Maize | cytosol | 32.51 | 37.7 |
| Zm00001d046992_P001 | Maize | cytosol | 43.46 | 37.61 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 41.7 | 36.31 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 30.74 | 34.94 |
| Zm00001d051524_P002 | Maize | nucleus | 47.7 | 33.5 |
| Zm00001d014267_P001 | Maize | nucleus | 47.0 | 31.52 |
| Zm00001d046215_P001 | Maize | cytosol | 32.51 | 28.75 |
| Zm00001d033453_P001 | Maize | cytosol | 27.21 | 22.92 |
Protein Annotations
| EntrezGene:100282725 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:BT062058 | UniProt:C0HIA2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:ONM08563.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR32343 | PANTHER:PTHR32343:SF11 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00019489CF | EnsemblPlantsGene:Zm00001d033766 | EnsemblPlants:Zm00001d033766_P002 |
| EnsemblPlants:Zm00001d033766_T002 | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr1:-:273077966..273082841
Molecular Weight (calculated)
30808.3 Da
IEP (calculated)
4.607
GRAVY (calculated)
-0.210
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKTVKVSN LSLNALKREI TEFFSFSGDI EYVEMQSESE WSQLAYVTFK DSQGADTAVL LSGATIVDRA VIITPAENYQ LPPEAHKQLS GANVSTESAV
101: RKAEDVVSSM LAKGFVLSKD ALNLARSFDE RHNILSNATA TVASLDRQYG LSEKISLGRA IVGSKVKEVD ERYQVSELTK SALAAAEQKA SVAGSAILSN
201: QYVSAGASWL TSAFDMVTKA AGDMTSMAKD KVERAEEERK AIMWEERSGL VSEYAKIHLD EPSSWEPAVL PLESVDEQKL QAV
101: RKAEDVVSSM LAKGFVLSKD ALNLARSFDE RHNILSNATA TVASLDRQYG LSEKISLGRA IVGSKVKEVD ERYQVSELTK SALAAAEQKA SVAGSAILSN
201: QYVSAGASWL TSAFDMVTKA AGDMTSMAKD KVERAEEERK AIMWEERSGL VSEYAKIHLD EPSSWEPAVL PLESVDEQKL QAV
001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.