Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 93.03 | 91.16 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 81.56 | 81.56 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 81.15 | 81.15 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 81.15 | 81.15 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 81.56 | 79.28 |
| Os04t0641400-02 | Rice | plastid | 82.79 | 70.38 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 60.25 | 60.74 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 57.79 | 57.32 |
| CDX84035 | Canola | nucleus | 51.64 | 51.64 |
| CDX96860 | Canola | nucleus | 51.64 | 51.64 |
| Bra016705.1-P | Field mustard | nucleus | 51.64 | 51.64 |
| CDY49093 | Canola | cytosol | 51.64 | 51.43 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 51.64 | 51.43 |
| CDY62016 | Canola | nucleus | 49.18 | 51.28 |
| Bra019660.1-P | Field mustard | cytosol | 51.23 | 51.23 |
| AT1G14340.1 | Thale cress | nucleus | 51.23 | 51.23 |
| Solyc02g067390.2.1 | Tomato | cytosol | 47.95 | 45.88 |
| KRH69305 | Soybean | nucleus | 54.51 | 45.7 |
| PGSC0003DMT400017749 | Potato | cytosol | 47.54 | 45.49 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 46.31 | 44.31 |
| KRH40110 | Soybean | cytosol | 46.72 | 44.19 |
| AT3G01210.1 | Thale cress | cytosol | 44.26 | 43.37 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 51.64 | 41.31 |
| CDX74287 | Canola | cytosol | 42.62 | 41.27 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 42.62 | 41.27 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 41.8 | 40.48 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 38.11 | 32.86 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 37.7 | 32.51 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 36.48 | 32.01 |
| Zm00001d013271_P003 | Maize | cytosol | 35.66 | 30.96 |
| Zm00001d054082_P001 | Maize | cytosol | 34.02 | 29.33 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 36.89 | 28.39 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 34.84 | 27.07 |
| Zm00001d002475_P001 | Maize | extracellular | 34.84 | 27.07 |
| Zm00001d046992_P001 | Maize | cytosol | 34.84 | 25.99 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 36.48 | 25.72 |
| Zm00001d031612_P001 | Maize | cytosol | 21.72 | 22.08 |
| Zm00001d026150_P001 | Maize | cytosol | 21.72 | 22.08 |
| Zm00001d051524_P002 | Maize | nucleus | 35.25 | 21.34 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 27.05 | 20.31 |
| Zm00001d014267_P001 | Maize | nucleus | 34.84 | 20.14 |
| Zm00001d046215_P001 | Maize | cytosol | 21.31 | 16.25 |
| Zm00001d033453_P001 | Maize | cytosol | 17.62 | 12.8 |
Protein Annotations
| EntrezGene:100282237 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK46554.1 | ProteinID:AQK46557.1 | ProteinID:AQK46559.1 |
| ProteinID:AQK46560.1 | EMBL:BT087933 | UniProt:C4JAT6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0001A4C432 | EnsemblPlantsGene:Zm00001d026425 | EnsemblPlants:Zm00001d026425_P003 | EnsemblPlants:Zm00001d026425_T003 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr10:-:145556564..145561470
Molecular Weight (calculated)
26420.9 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.148
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSETGHTVQV TNLSSRVSES DLYEFFSFSG PIEHVELIRS GEYGATAYVT FKERFALETA VLLSGATIVD QPVCITYWGQ PEETFNFWDR PTWEVEEEIE
101: YTSYQSCQYN TTPQEALTVA QDIVKTMLAK GYVLSKDALA KARAFDESRG LTAAAAAKAA ELSKRIGLTD RVSAGVGAMR SVDETYRVTE TTKTVATATG
201: RTAAKVVNGI VTSSYFSAGA MMLSDALTRA AKAAADLAAH GRQS
101: YTSYQSCQYN TTPQEALTVA QDIVKTMLAK GYVLSKDALA KARAFDESRG LTAAAAAKAA ELSKRIGLTD RVSAGVGAMR SVDETYRVTE TTKTVATATG
201: RTAAKVVNGI VTSSYFSAGA MMLSDALTRA AKAAADLAAH GRQS
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.