Factsheet for Zm00001d027266_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007888_P002
Zm00001d016570_P001
Zm00001d037747_P001
Zm00001d039455_P002
Zm00001d045580_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT4G17486.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT4G17486.1	Zm00001d007888_P002	AT2G39760.1	21798944
AT4G17486.1	Zm00001d045580_P001	AT4G25660.1	21798944
AT4G17486.1	Zm00001d045580_P001	AT4G25680.1	21798944
AT5G47310.1	Zm00001d037747_P001	AT1G55190.1	21798944
AT5G47310.1	Zm00001d039455_P002	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95706	Sorghum	mitochondrion	74.41	94.44
Os03t0100900-01	Rice	plastid	61.28	74.29
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	56.23	71.98
TraesCS4B01G376300.2	Wheat	vacuole	56.57	70.89
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	53.87	66.67
GSMUA_AchrUn_...	Banana	cytosol	44.11	60.93
GSMUA_Achr4P30040_001	Banana	mitochondrion	45.79	60.71
Zm00001d026190_P001	Maize	cytosol	41.08	58.65
Zm00001d002758_P002	Maize	cytosol	41.08	58.37
KRH04183	Soybean	cytosol	41.75	55.61
PGSC0003DMT400067477	Potato	cytosol	41.08	55.2
KRH77327	Soybean	cytosol	41.41	54.91
KRH28159	Soybean	cytosol	41.41	54.91
Solyc08g078220.2.1	Tomato	cytosol	40.74	54.75
KRH57475	Soybean	cytosol	40.74	54.26
Zm00001d017468_P001	Maize	cytosol	38.05	54.07
CDY27921	Canola	cytosol	39.73	53.15
AT4G17486.1	Thale cress	cytosol	38.72	51.34
CDY09624	Canola	cytosol	37.04	51.16
CDX90471	Canola	cytosol	36.7	50.93
Bra012661.1-P	Field mustard	cytosol	36.7	50.93
CDX76571	Canola	cytosol	38.72	50.88
AT5G47310.1	Thale cress	cytosol	41.41	50.2
CDY64684	Canola	cytosol	40.74	49.79
CDX77757	Canola	cytosol	40.74	49.79
Bra024951.1-P	Field mustard	cytosol	40.74	49.79
GSMUA_Achr1P00440_001	Banana	mitochondrion	45.45	49.27
Zm00001d046249_P001	Maize	cytosol	32.32	45.5
Zm00001d028130_P001	Maize	mitochondrion	31.65	37.6
Zm00001d048173_P001	Maize	mitochondrion	31.65	37.15
GSMUA_Achr5P12520_001	Banana	plastid	45.45	36.99
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	31.31	35.77
Zm00001d045118_P001	Maize	plastid	23.57	28.93
Zm00001d029725_P001	Maize	extracellular, mitochondrion	18.52	22.45
Zm00001d045580_P001	Maize	cytosol	18.18	20.15

Protein Annotations

EnsemblPlants:Zm00001d027266_P001	EnsemblPlants:Zm00001d027266_T001	EnsemblPlantsGene:Zm00001d027266	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:ONL92500.1	SEG:seg	SMART:SM01179	UniParc:UPI000221568F
UniProt:A0A1D6JJK7	MapMan:19.4.1.7	:	:	:	:

Description

DeSI-like protein

Coordinates

chr1:+:1027058..1030126

Molecular Weight (calculated)

32222.9 Da

IEP (calculated)

7.607

GRAVY (calculated)

-0.308

Length

297 amino acids

Sequence
(BLAST)

001: MCRRPVPSAP AVRVLSPATA TARGEGNQQA PPPLPLASAV PTGRQAGRPR QIYLSLPLVV AGRRAMRMRV LPASWSSSSA KHSSGSSESQ EHPSSSSATA
101: AVYLNIYDIS PLNHYLYWFG LGIFHSGIQV HGMEYGFGAH EYPTSGVFQV EPKSCPGFIF RRSVCVGVTH MSRSQVRTSI EDLAEDYHGD TYHLILKNCN
201: HFTADVCERL TGKPVPGWVN RLARLGSFFN CVLPDSIKVS AVRDVNAHPD FSDDGLGSNA SILEGSDDDD LDQLLRTPNS DTVSSRDKTL TPGRDSL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.