CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER97813
EES00126
EES05123
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	EES05123	AT1G27300.1	21798944
AT4G17486.1	EER97813	AT2G39760.1	21798944
AT4G17486.1	EER87703	AT4G25660.1	21798944
AT4G17486.1	EER87703	AT4G25680.1	21798944
AT5G47310.1	EES00126	AT1G55190.1	21798944
AT5G47310.1	OQU77594	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027266_P001	Maize	mitochondrion, plastid	94.44	74.41
Os03t0100900-01	Rice	plastid	77.78	74.29
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	70.94	71.55
TraesCS4B01G376300.2	Wheat	vacuole	72.22	71.31
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	69.66	67.92
EES11216	Sorghum	cytosol	55.13	62.02
GSMUA_AchrUn_...	Banana	cytosol	55.98	60.93
GSMUA_Achr4P30040_001	Banana	mitochondrion	58.12	60.71
EES07522	Sorghum	cytosol	49.57	55.5
KRH04183	Soybean	cytosol	52.56	55.16
PGSC0003DMT400067477	Potato	cytosol	51.28	54.3
CDY27921	Canola	cytosol	51.28	54.05
Solyc08g078220.2.1	Tomato	cytosol	50.85	53.85
KRH57475	Soybean	cytosol	50.85	53.36
KRH77327	Soybean	cytosol	50.85	53.12
KRH28159	Soybean	cytosol	50.85	53.12
AT4G17486.1	Thale cress	cytosol	50.43	52.68
CDX76571	Canola	cytosol	50.0	51.77
CDY09624	Canola	cytosol	47.44	51.63
CDX90471	Canola	cytosol	47.01	51.4
Bra012661.1-P	Field mustard	cytosol	47.01	51.4
GSMUA_Achr1P00440_001	Banana	mitochondrion	58.97	50.37
AT5G47310.1	Thale cress	cytosol	52.56	50.2
CDY64684	Canola	cytosol	51.71	49.79
CDX77757	Canola	cytosol	51.71	49.79
Bra024951.1-P	Field mustard	cytosol	51.71	49.79
EER89945	Sorghum	cytosol	41.88	46.45
KXG39054	Sorghum	plastid	42.31	39.92
GSMUA_Achr5P12520_001	Banana	plastid	58.97	37.81
EER95329	Sorghum	mitochondrion	40.6	37.7
KXG19474	Sorghum	plastid	32.48	29.01
EER94588	Sorghum	cytosol	23.08	22.04
EER87703	Sorghum	cytosol	22.65	19.78

Protein Annotations

EnsemblPlants:EER95706	EnsemblPlantsGene:SORBI_3001G543800	EntrezGene:8081565	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:EER95706	ProteinID:EER95706.1	RefSeq:XP_002468708.1	SEG:seg
SMART:SM01179	unigene:Sbi.18950	UniParc:UPI0001A8339B	UniProt:C5WNP0	MapMan:19.4.1.7	:

Description

hypothetical protein

Coordinates

chr1:-:80732719..80737667

Molecular Weight (calculated)

25740.9 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.356

Length

234 amino acids

Sequence
(BLAST)

001: MRMRVLPASW SSSSAKHSSG SSESQEHPSP SSTTAAAAVY LNIYDISPLN HYLYWFGLGI FHSGIEVHGM EYGFGAHEYP TSGVFQVEPK SCPGFIFRRS
101: VCVGTTHMSR SQVHTSIEDL AEDYHGDTYH LIVKNCNHFT ADVCKRLTGK PVPGWVNRLA RLGSFFNCVL PDSIKVSAVR DVNTHPDFSD DDLGSNASIL
201: EGSDDDDLDQ LLRTPNSDIV SSRDKTLTPG RDSI

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.