CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	89.92	85.77
VIT_18s0001g12090.t01	Wine grape	mitochondrion	64.92	65.18
KRG89196	Soybean	mitochondrion	64.92	64.14
KRH49521	Soybean	mitochondrion	64.52	63.74
KRH05795	Soybean	mitochondrion	62.5	61.75
EER95329	Sorghum	mitochondrion	62.5	61.51
KRH15239	Soybean	mitochondrion	62.1	61.35
Solyc01g109430.2.1	Tomato	cytosol, mitochondrion, nucleus	60.89	60.64
PGSC0003DMT400064873	Potato	nucleus	60.89	60.64
Solyc12g089060.1.1	Tomato	mitochondrion	60.08	60.32
PGSC0003DMT400039949	Potato	mitochondrion	60.08	60.32
KRH38144	Soybean	mitochondrion	52.02	60.0
CDY10616	Canola	cytosol, nucleus, peroxisome	59.27	58.57
Solyc04g080030.2.1	Tomato	mitochondrion	56.85	58.02
AT1G47740.3	Thale cress	nucleus	60.08	53.41
CDY17002	Canola	nucleus	60.48	53.38
CDY25677	Canola	nucleus	57.66	53.16
Bra014091.1-P	Field mustard	nucleus	60.08	53.02
Bra032229.1-P	Field mustard	nucleus	59.27	52.69
CDY23657	Canola	nucleus	59.27	52.5
CDY17812	Canola	nucleus	59.27	52.31
PGSC0003DMT400071605	Potato	mitochondrion	58.87	51.23
VIT_03s0063g02130.t01	Wine grape	mitochondrion	65.73	48.66
EES11216	Sorghum	cytosol	40.73	48.56
EER89945	Sorghum	cytosol	38.31	45.02
EES07522	Sorghum	cytosol	37.5	44.5
EER95706	Sorghum	mitochondrion	39.92	42.31
KXG19474	Sorghum	plastid	36.69	34.73
EER94588	Sorghum	cytosol	20.97	21.22
EER87703	Sorghum	cytosol	22.58	20.9

Protein Annotations

EnsemblPlants:KXG39054	EnsemblPlantsGene:SORBI_3001G323300	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF4
PFAM:PF05903	ProteinID:KXG39054	ProteinID:KXG39054.1	SMART:SM01179	UniParc:UPI00081ACB37	UniProt:A0A1B6QMB2
MapMan:19.4.1.7	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:61033323..61040378

Molecular Weight (calculated)

27620.2 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.272

Length

248 amino acids

Sequence
(BLAST)

001: MSVMIPGSKK ERNLSMRFQS GQKSSGKFCL FSKVQSASPP PGNTLVYLNV YDLTPVNGYV YWAGLGVFHS GIEVHGVEYA FGAHDYSISG VFEVEPRQCP
101: GFKFRRSICM GTTCLDPLQI REFMEIQSVN YNGDTYHLIS KNCNHFCEDI CKRLTGNLIP KWVNRLARMG AVCNCILPVP LKISAARHDP GCQAEDSERK
201: MLTGSFSCFS SISLCQRHFS TSSLSLRSPT KGTSWDAKQS NSTRLKKS

Best Arabidopsis Sequence Match ( AT1G47740.3 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.