CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046249_P001	Maize	cytosol	93.84	93.84
TraesCS7B01G270200.1	Wheat	cytosol	81.99	83.98
TraesCS7A01G357600.1	Wheat	cytosol	81.52	83.5
TraesCS7D01G365100.1	Wheat	cytosol	81.04	83.01
Os06t0560400-01	Rice	cytosol	84.36	82.41
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	59.72	58.6
GSMUA_Achr2P19400_001	Banana	plastid	56.87	55.3
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	54.5	53.74
KRH03735	Soybean	nucleus	56.87	53.33
EES11216	Sorghum	cytosol	51.18	51.92
EES07522	Sorghum	cytosol	51.18	51.67
Solyc12g006880.1.1	Tomato	cytosol	54.03	50.89
PGSC0003DMT400002750	Potato	cytosol	54.03	50.89
KRH54877	Soybean	cytosol, peroxisome	44.55	49.74
KRH63012	Soybean	nucleus	54.03	49.57
EER95706	Sorghum	mitochondrion	46.45	41.88
KXG39054	Sorghum	plastid	45.02	38.31
EER95329	Sorghum	mitochondrion	45.02	37.7
KXG19474	Sorghum	plastid	35.07	28.24
EER94588	Sorghum	cytosol	26.07	22.45
EER87703	Sorghum	cytosol	25.59	20.15

Protein Annotations

EnsemblPlants:EER89945	EnsemblPlantsGene:SORBI_3010G168600	EntrezGene:8061979	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF13	PFAM:PF05903	ProteinID:EER89945	ProteinID:EER89945.1	RefSeq:XP_002438578.1	SEG:seg
SMART:SM01179	unigene:Sbi.17401	UniParc:UPI0001A898A1	UniProt:C5Z4N6	MapMan:19.4.1.7	:

Description

hypothetical protein

Coordinates

chr10:-:49719700..49727770

Molecular Weight (calculated)

23243.1 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.305

Length

211 amino acids

Sequence
(BLAST)

001: MGGAVSGGAA VGDAAGAATY PVVLNVYDLT PINNYLHWCG LGIFHSAVEV HGSEYSFGAH DHPSSGVFEV EPKNCPGFIY RCTVFIGRTT LNPLEFREFI
101: QRMASEYHGD TYHLISKNCN HFTDDLSTRL TGKPIPGWVN RLARLGAFCN CLLPESMRLE STETKHLADC RFSDGSNTTS NDNFDEDDLE DKHLLPTSSV
201: GEDTIVKEVH R

Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)

001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP

Arabidopsis Description

DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.