Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002750 | Potato | cytosol | 98.66 | 98.66 |
| VIT_11s0016g04860.t01 | Wine grape | cytosol, nucleus, peroxisome | 70.54 | 73.83 |
| KRH03735 | Soybean | nucleus | 62.5 | 62.22 |
| GSMUA_Achr5P06500_001 | Banana | cytosol, extracellular, peroxisome | 59.38 | 61.86 |
| GSMUA_Achr2P19400_001 | Banana | plastid | 57.14 | 58.99 |
| KRH54877 | Soybean | cytosol, peroxisome | 49.11 | 58.2 |
| KRH63012 | Soybean | nucleus | 59.38 | 57.83 |
| TraesCS7B01G270200.1 | Wheat | cytosol | 51.34 | 55.83 |
| TraesCS7A01G357600.1 | Wheat | cytosol | 50.89 | 55.34 |
| TraesCS7D01G365100.1 | Wheat | cytosol | 50.45 | 54.85 |
| EER89945 | Sorghum | cytosol | 50.89 | 54.03 |
| Os06t0560400-01 | Rice | cytosol | 51.34 | 53.24 |
| Zm00001d046249_P001 | Maize | cytosol | 50.0 | 53.08 |
| Solyc08g078220.2.1 | Tomato | cytosol | 49.11 | 49.77 |
| Solyc04g080030.2.1 | Tomato | mitochondrion | 43.75 | 40.33 |
| Solyc12g089060.1.1 | Tomato | mitochondrion | 43.75 | 39.68 |
| Solyc01g109430.2.1 | Tomato | cytosol, mitochondrion, nucleus | 43.75 | 39.36 |
| Solyc03g117100.2.1 | Tomato | cytosol | 35.71 | 35.56 |
| Solyc06g068380.2.1 | Tomato | cytosol | 37.5 | 31.82 |
| Solyc02g082060.1.1 | Tomato | cytosol | 21.43 | 22.54 |
| Solyc03g034310.1.1 | Tomato | cytosol | 8.48 | 22.09 |
| Solyc03g008010.2.1 | Tomato | cytosol | 23.21 | 21.94 |
Protein Annotations
| EnsemblPlants:Solyc12g006880.1.1 | EnsemblPlantsGene:Solyc12g006880.1 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF13 |
| PFAM:PF05903 | SEG:seg | SMART:SM01179 | UniParc:UPI000276AAD5 | UniProt:K4DBM5 | MapMan:19.4.1.7 |
Description
No Description!
Coordinates
chr12:-:1323811..1329389
Molecular Weight (calculated)
24751.6 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.505
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEESTSNSK ADDNNNAAKT DGSYETPVIL NVYDLTPANQ YSVWLGFGIF HSGIEVHGME YGYGAHDFPI SGVFEVEPKS CPGFIYRCSV PLGRIKMPPS
101: EFHAFLEDVA SEYHGDTYHL ISKNCNHFTD DIAQRLTGKG IPGWVNRLAR VGAFCSCLLP ESLQATTVKQ LPEYHHCTEE DGSGSMTSTT PHEPTESEDG
201: DQDKHLLSSP ISSREVAFIR ETQR
101: EFHAFLEDVA SEYHGDTYHL ISKNCNHFTD DIAQRLTGKG IPGWVNRLAR VGAFCSCLLP ESLQATTVKQ LPEYHHCTEE DGSGSMTSTT PHEPTESEDG
201: DQDKHLLSSP ISSREVAFIR ETQR
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
Arabidopsis Description
DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.