Factsheet for PGSC0003DMT400002750

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006880.1.1	Tomato	cytosol	98.66	98.66
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	70.98	74.3
KRH03735	Soybean	nucleus	62.95	62.67
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	59.82	62.33
GSMUA_Achr2P19400_001	Banana	plastid	57.59	59.45
KRH54877	Soybean	cytosol, peroxisome	49.11	58.2
KRH63012	Soybean	nucleus	59.38	57.83
TraesCS7B01G270200.1	Wheat	cytosol	51.34	55.83
TraesCS7A01G357600.1	Wheat	cytosol	50.89	55.34
TraesCS7D01G365100.1	Wheat	cytosol	50.45	54.85
EER89945	Sorghum	cytosol	50.89	54.03
Os06t0560400-01	Rice	cytosol	51.34	53.24
Zm00001d046249_P001	Maize	cytosol	50.0	53.08
PGSC0003DMT400067477	Potato	cytosol	49.11	49.77
PGSC0003DMT400039949	Potato	mitochondrion	44.64	40.49
PGSC0003DMT400064873	Potato	nucleus	43.75	39.36
PGSC0003DMT400071605	Potato	mitochondrion	45.98	36.14
PGSC0003DMT400036630	Potato	cytosol	35.71	35.87
PGSC0003DMT400073331	Potato	nucleus	37.05	26.27
PGSC0003DMT400026255	Potato	cytosol	23.21	21.94
PGSC0003DMT400018924	Potato	cytosol	20.09	21.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400002750	EnsemblPlantsGene:PGSC0003DMG400001067	EntrezGene:102582965	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF13	PFAM:PF05903	PGSC:PGSC0003DMG400001067	RefSeq:XP_006366865.1	SEG:seg	SMART:SM01179
UniParc:UPI000294DA80	UniProt:M0ZKK5	MapMan:19.4.1.7	:	:	:

Description

Ethylene-responsive element-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001067]

Coordinates

chr12:+:4920261..4927464

Molecular Weight (calculated)

24760.6 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.531

Length

224 amino acids

Sequence
(BLAST)

001: MGEESTSNSK PDDNNNAAKN DGSYETPVIL NVYDLTPANQ YSVWLGFGIF HSGIEVHGME YGYGAHDFPI SGVFEVEPKS CPGFIYRCSV PLGRIKMPPS
101: EFHAFLEDVA SEYHGDTYHL ISKNCNHFTD DIAQRLTGKG IPGWVNRLAR VGAFCSCLLP ESLQATTVKQ LPEYHHCTEE DGSGSMTSTT PHEPTESEDG
201: DQDKHLLSSP IGSREVAFIR ETQR

Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)

001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP

Arabidopsis Description

DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.