Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g078220.2.1 | Tomato | cytosol | 98.64 | 98.64 |
| KRH28159 | Soybean | cytosol | 68.78 | 67.86 |
| KRH77327 | Soybean | cytosol | 67.87 | 66.96 |
| KRH04183 | Soybean | cytosol | 67.42 | 66.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.71 | 66.51 |
| KRH57475 | Soybean | cytosol | 66.06 | 65.47 |
| GSMUA_Achr4P30040_001 | Banana | mitochondrion | 65.16 | 64.29 |
| AT5G47310.1 | Thale cress | cytosol | 69.68 | 62.86 |
| AT4G17486.1 | Thale cress | cytosol | 63.35 | 62.5 |
| Zm00001d026190_P001 | Maize | cytosol | 58.37 | 62.02 |
| EES11216 | Sorghum | cytosol | 57.47 | 61.06 |
| CDY64684 | Canola | cytosol | 66.97 | 60.91 |
| CDX77757 | Canola | cytosol | 66.97 | 60.91 |
| Bra024951.1-P | Field mustard | cytosol | 66.97 | 60.91 |
| CDY27921 | Canola | cytosol | 61.09 | 60.81 |
| CDY09624 | Canola | cytosol | 58.82 | 60.47 |
| CDX90471 | Canola | cytosol | 58.37 | 60.28 |
| Bra012661.1-P | Field mustard | cytosol | 57.92 | 59.81 |
| Zm00001d002758_P002 | Maize | cytosol | 56.56 | 59.81 |
| CDX76571 | Canola | cytosol | 61.09 | 59.73 |
| Os04t0548000-01 | Rice | cytosol | 53.85 | 57.49 |
| TraesCS6A01G243700.2 | Wheat | cytosol | 52.04 | 56.37 |
| TraesCS6D01G225900.1 | Wheat | cytosol | 52.04 | 56.1 |
| TraesCS6B01G280600.1 | Wheat | cytosol | 52.04 | 56.1 |
| Os02t0655500-01 | Rice | cytosol | 51.13 | 55.39 |
| Zm00001d017468_P001 | Maize | cytosol | 51.13 | 54.07 |
| EES07522 | Sorghum | cytosol | 51.13 | 54.07 |
| TraesCS2A01G416700.1 | Wheat | cytosol | 51.13 | 54.07 |
| TraesCS2B01G435700.2 | Wheat | cytosol | 50.68 | 53.85 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 51.13 | 53.05 |
| Os03t0100900-01 | Rice | plastid | 57.92 | 52.24 |
| EER95706 | Sorghum | mitochondrion | 54.3 | 51.28 |
| TraesCS5A01G543200.2 | Wheat | cytosol, peroxisome, vacuole | 53.39 | 50.86 |
| TraesCS4B01G376300.2 | Wheat | vacuole | 53.85 | 50.21 |
| GSMUA_Achr1P00440_001 | Banana | mitochondrion | 61.09 | 49.27 |
| HORVU0Hr1G009550.1 | Barley | cytosol, peroxisome, plasma membrane | 53.39 | 49.17 |
| PGSC0003DMT400002750 | Potato | cytosol | 49.77 | 49.11 |
| HORVU2Hr1G098080.1 | Barley | peroxisome | 51.58 | 43.68 |
| PGSC0003DMT400036630 | Potato | cytosol | 42.08 | 41.7 |
| Zm00001d027266_P001 | Maize | mitochondrion, plastid | 55.2 | 41.08 |
| PGSC0003DMT400064873 | Potato | nucleus | 46.15 | 40.96 |
| PGSC0003DMT400039949 | Potato | mitochondrion | 44.8 | 40.08 |
| GSMUA_Achr5P12520_001 | Banana | plastid | 60.63 | 36.71 |
| PGSC0003DMT400071605 | Potato | mitochondrion | 44.8 | 34.74 |
| PGSC0003DMT400073331 | Potato | nucleus | 41.63 | 29.11 |
| PGSC0003DMT400026255 | Potato | cytosol | 25.79 | 24.05 |
| PGSC0003DMT400018924 | Potato | cytosol | 18.55 | 19.34 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067477 | EnsemblPlantsGene:PGSC0003DMG401026234 | EntrezGene:102600972 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF35 | PFAM:PF05903 | PGSC:PGSC0003DMG401026234 | RefSeq:XP_006359243.1 | RefSeq:XP_006359244.1 | SEG:seg |
| SMART:SM01179 | UniParc:UPI000295B118 | UniProt:M1CHC2 | MapMan:19.4.1.7 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401026234]
Coordinates
chr8:+:51354594..51362947
Molecular Weight (calculated)
24838.0 Da
IEP (calculated)
5.933
GRAVY (calculated)
-0.444
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLLRSSSSS SKEQFNGEKN RSLLYLNVYD LTPVNNYLYW AGLGVFHSGI EVHGLEYGYG AHEYPSSGIF EVEPRSCPGF TFRRSVLLGS TDMSRSEVRS
101: YMEHISGKYH GDSYHLIAKN CNHFADEVCS HLTGKPIPGW VNRLARVGSF CNCILPESIQ VTRIRHLPDH QAFSEDGTDS DASSVSVDSE EEDSDHQLLT
201: VQNSDMAFLN EKPVRLAKEL L
101: YMEHISGKYH GDSYHLIAKN CNHFADEVCS HLTGKPIPGW VNRLARVGSF CNCILPESIQ VTRIRHLPDH QAFSEDGTDS DASSVSVDSE EEDSDHQLLT
201: VQNSDMAFLN EKPVRLAKEL L
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Arabidopsis Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.