Factsheet for TraesCS4B01G376300.2

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G255800.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G266900.1
TraesCS2D01G345400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25680.1	21798944
AT5G47310.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3D01G106500.1	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	91.56	93.53
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	90.3	89.17
EER95706	Sorghum	mitochondrion	71.31	72.22
Os03t0100900-01	Rice	plastid	73.42	71.02
GSMUA_Achr4P30040_001	Banana	mitochondrion	56.12	59.38
GSMUA_AchrUn_...	Banana	cytosol	53.16	58.6
Zm00001d027266_P001	Maize	mitochondrion, plastid	70.89	56.57
KRH28159	Soybean	cytosol	52.74	55.8
TraesCS2B01G435700.2	Wheat	cytosol	48.52	55.29
KRH04183	Soybean	cytosol	51.9	55.16
KRH57475	Soybean	cytosol	51.05	54.26
KRH77327	Soybean	cytosol	51.05	54.02
PGSC0003DMT400067477	Potato	cytosol	50.21	53.85
Solyc08g078220.2.1	Tomato	cytosol	49.79	53.39
CDY09624	Canola	cytosol	48.1	53.02
CDX90471	Canola	cytosol	47.68	52.8
Bra012661.1-P	Field mustard	cytosol	47.68	52.8
TraesCS6B01G280600.1	Wheat	cytosol	45.15	52.2
CDY27921	Canola	cytosol	48.52	51.8
AT5G47310.1	Thale cress	cytosol	52.74	51.02
Bra024951.1-P	Field mustard	cytosol	51.9	50.62
CDX77757	Canola	cytosol	51.9	50.62
CDY64684	Canola	cytosol	51.9	50.62
AT4G17486.1	Thale cress	cytosol	47.68	50.45
CDX76571	Canola	cytosol	47.68	50.0
GSMUA_Achr1P00440_001	Banana	mitochondrion	56.96	49.27
TraesCS7B01G270200.1	Wheat	cytosol	42.19	48.54
TraesCS4B01G261700.1	Wheat	mitochondrion	38.82	37.1
GSMUA_Achr5P12520_001	Banana	plastid	54.85	35.62
TraesCS7B01G048600.1	Wheat	plastid	36.29	33.2
TraesCS1B01G205700.1	Wheat	cytosol, peroxisome, plastid	25.32	24.79

Protein Annotations

EnsemblPlants:TraesCS4B01G376300.2	EnsemblPlantsGene:TraesCS4B01G376300	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35
PFAM:PF05903	SEG:seg	SignalP:SignalP-noTM	SMART:SM01179	MapMan:19.4.1.7	:

Description

No Description!

Coordinates

chr4B:-:660108059..660110147

Molecular Weight (calculated)

25849.5 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.100

Length

237 amino acids

Sequence
(BLAST)

001: MRMRVLPAFS FSFSTAAAAA EPPTAAPSVA PAPAPAPAAT YAVYLNIYDI SPINNYLYWF GLGIFHSAVQ VHGMEFGYGA HEYATSGVFQ VEPKSCPGFI
101: FRRSVCMGTT NMSRAEVRAF LEDLAEDYHG DTYHLIVKNC NHFTADVCKR LTGKPTPGWV NRLARLGSVC NCVLPENIKV SAVRDETAHL EFSDDDLESD
201: TSIIDSDIGD LDHLLTTPNS DVVPPKDKTL TPGRDSL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.