Factsheet for GSMUA_Achr1P00440_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P09070_001
GSMUA_Achr7P10650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT4G17486.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25660.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT5G47310.1	GSMUA_Achr7P09070_001	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30040_001	Banana	mitochondrion	64.23	78.57
GSMUA_AchrUn_...	Banana	cytosol	60.95	77.67
EES11216	Sorghum	cytosol	51.82	68.27
Zm00001d026190_P001	Maize	cytosol	50.0	65.87
Zm00001d002758_P002	Maize	cytosol	49.63	65.07
Os02t0655500-01	Rice	cytosol	47.08	63.24
Os04t0548000-01	Rice	cytosol	47.08	62.32
Zm00001d017468_P001	Maize	cytosol	46.72	61.24
EES07522	Sorghum	cytosol	46.72	61.24
PGSC0003DMT400067477	Potato	cytosol	49.27	61.09
TraesCS6A01G243700.2	Wheat	cytosol	45.26	60.78
Solyc08g078220.2.1	Tomato	cytosol	48.91	60.63
TraesCS6D01G225900.1	Wheat	cytosol	45.26	60.49
TraesCS6B01G280600.1	Wheat	cytosol	44.89	60.0
KRH28159	Soybean	cytosol	48.91	59.82
KRH04183	Soybean	cytosol	48.54	59.64
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	50.37	59.48
KRH77327	Soybean	cytosol	48.54	59.38
TraesCS2A01G416700.1	Wheat	cytosol	45.26	59.33
EER95706	Sorghum	mitochondrion	50.37	58.97
Os03t0100900-01	Rice	plastid	52.55	58.78
TraesCS2B01G435700.2	Wheat	cytosol	44.53	58.65
TraesCS2D01G413700.1	Wheat	cytosol	45.26	58.22
KRH57475	Soybean	cytosol	46.72	57.4
Bra012661.1-P	Field mustard	cytosol	44.53	57.01
CDX90471	Canola	cytosol	44.53	57.01
TraesCS4B01G376300.2	Wheat	vacuole	49.27	56.96
CDY09624	Canola	cytosol	44.53	56.74
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	49.63	56.67
CDX77757	Canola	cytosol	49.63	55.97
AT4G17486.1	Thale cress	cytosol	45.62	55.8
Bra024951.1-P	Field mustard	cytosol	49.27	55.56
CDY64684	Canola	cytosol	49.27	55.56
CDY27921	Canola	cytosol	44.16	54.5
CDX76571	Canola	cytosol	44.16	53.54
AT5G47310.1	Thale cress	cytosol	47.81	53.47
GSMUA_Achr5P12520_001	Banana	plastid	70.8	53.15
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	41.24	52.56
GSMUA_Achr2P19400_001	Banana	plastid	39.05	49.31
HORVU2Hr1G098080.1	Barley	peroxisome	44.89	47.13
GSMUA_Achr7P25980_001	Banana	mitochondrion	35.04	46.15
Zm00001d027266_P001	Maize	mitochondrion, plastid	49.27	45.45
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	26.64	44.24
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	34.67	41.3
GSMUA_Achr3P04560_001	Banana	mitochondrion	33.58	40.53
GSMUA_Achr4P01900_001	Banana	mitochondrion	32.85	39.82
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	35.4	37.6
GSMUA_Achr11P...	Banana	mitochondrion	34.31	29.65
GSMUA_Achr11P...	Banana	cytosol	21.9	24.29
GSMUA_Achr11P...	Banana	cytosol	17.52	23.53
GSMUA_AchrUn_...	Banana	cytosol	21.17	23.39
GSMUA_Achr8P12230_001	Banana	cytosol	20.8	23.17

Protein Annotations

EnsemblPlants:GSMUA_Achr1P00440_001	EnsemblPlants:GSMUA_Achr1T00440_001	EnsemblPlantsGene:GSMUA_Achr1G00440_001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI000296A488	UniProt:M0RVV2
MapMan:19.4.1.7	:	:	:	:	:

Description

UPF0326 protein At4g17486 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00440_001]

Coordinates

chr1:-:403080..407129

Molecular Weight (calculated)

31342.5 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.348

Length

274 amino acids

Sequence
(BLAST)

001: MFSQVSTSLV RPMKQRLFPA MFQTGEPYPA NPRLPLPSPR FLLHVYYRKV RKGETSPLFS LFPPPRERRY GSGRTHLYLN VYDLTPVNKY LYWFGLGVFH
101: SGIEVHGMEY GFGAHEYPTS GVFEVEPKSC PGFIFRRSVW LGTTDMSRSE FRLFIEDLAG KYHGDTYHLI IKNCNHFTDE VCMRLTGKPI PGWVNRLARL
201: GSFCNCILPG NIRVSTVGQL PTHPACSDDE SDLFAWSSAD ESDEEDADCH PLKKPNIDFV HSIDEPLRLA RDVM

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.