Factsheet for HORVU0Hr1G009550.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
peroxisome 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU2Hr1G064920.1
HORVU2Hr1G084420.1
HORVU3Hr1G018940.2
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT4G17486.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT4G17486.1	HORVU7Hr1G002080.2	AT4G25660.1	21798944
AT4G17486.1	HORVU7Hr1G002080.2	AT4G25680.1	21798944
AT5G47310.1	HORVU1Hr1G028520.1	AT1G55190.1	21798944
AT5G47310.1	HORVU3Hr1G018940.2	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	87.5	90.52
TraesCS4B01G376300.2	Wheat	vacuole	89.17	90.3
Os03t0100900-01	Rice	plastid	71.25	69.8
EER95706	Sorghum	mitochondrion	67.92	69.66
GSMUA_AchrUn_...	Banana	cytosol	53.33	59.53
GSMUA_Achr4P30040_001	Banana	mitochondrion	54.17	58.04
KRH04183	Soybean	cytosol	50.83	54.71
KRH28159	Soybean	cytosol	50.83	54.46
KRH57475	Soybean	cytosol	50.42	54.26
Zm00001d027266_P001	Maize	mitochondrion, plastid	66.67	53.87
CDX90471	Canola	cytosol	47.92	53.74
PGSC0003DMT400067477	Potato	cytosol	49.17	53.39
Bra012661.1-P	Field mustard	cytosol	47.5	53.27
KRH77327	Soybean	cytosol	49.58	53.12
CDY09624	Canola	cytosol	47.5	53.02
Solyc08g078220.2.1	Tomato	cytosol	48.75	52.94
CDY27921	Canola	cytosol	47.92	51.8
CDY64684	Canola	cytosol	51.67	51.03
CDX77757	Canola	cytosol	51.67	51.03
Bra024951.1-P	Field mustard	cytosol	51.67	51.03
AT5G47310.1	Thale cress	cytosol	52.08	51.02
AT4G17486.1	Thale cress	cytosol	47.08	50.45
CDX76571	Canola	cytosol	47.08	50.0
GSMUA_Achr1P00440_001	Banana	mitochondrion	56.67	49.63
HORVU2Hr1G098080.1	Barley	peroxisome	46.67	42.91
GSMUA_Achr5P12520_001	Banana	plastid	54.58	35.89
HORVU7Hr1G029950.1	Barley	plastid	33.33	32.52
HORVU4Hr1G070620.3	Barley	cytosol, nucleus, plastid	38.33	27.88
HORVU1Hr1G049520.3	Barley	cytosol, peroxisome, plastid	25.0	24.69
HORVU1Hr1G049510.1	Barley	cytosol	13.75	24.63
HORVU7Hr1G002080.2	Barley	cytosol	18.33	22.34

Protein Annotations

EnsemblPlants:HORVU0Hr1G009550.1	EnsemblPlantsGene:HORVU0Hr1G009550	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35
PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI000B4721BA	UniProt:A0A287DYN9	MapMan:19.4.1.7

Description

No Description!

Coordinates

chrchrUn:-:55072669..55076482

Molecular Weight (calculated)

25912.5 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.185

Length

240 amino acids

Sequence
(BLAST)

001: MGVLPALNGP AAAAAPPTAP PPLPSEAAPA PAPAPAPPPP ATYAVYLNIY DISPINNYLY WFGLGIFHSA VEVHGMEFGY GAHEYATSGV FQVEPKSCPG
101: FIFRRSVCMG TTNMSRAEVR TFLEDLAEDY HGDTYHLIVK NCNHFTADVC KRLTGKPTPG WVNRLARLGS VCNCVLPENI KVSAVRDETA HLEFSDDDLE
201: SDTSMVDDSD IGDLDHLLTT PNSDVIPPKD KTLTPGRESL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.