Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G130300.1 | Wheat | plastid | 86.11 | 97.38 |
| TraesCS1A01G124100.1 | Wheat | plastid | 85.19 | 96.34 |
| TraesCS1B01G143000.1 | Wheat | plastid | 85.19 | 95.83 |
| Os05t0200280-01 | Rice | plasma membrane | 70.37 | 78.76 |
| Zm00001d037747_P001 | Maize | plastid | 64.81 | 74.47 |
| OQU77594 | Sorghum | plastid | 66.67 | 73.47 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 54.63 | 62.77 |
| HORVU3Hr1G018940.2 | Barley | plastid | 69.44 | 58.82 |
| KRH23330 | Soybean | plastid | 46.3 | 54.35 |
| KRH10001 | Soybean | mitochondrion | 46.3 | 54.35 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 43.52 | 51.65 |
| Solyc03g121460.1.1 | Tomato | plastid | 42.59 | 50.55 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 43.98 | 49.22 |
| KRH47141 | Soybean | plasma membrane | 39.35 | 47.75 |
| KRH44167 | Soybean | plasma membrane | 38.89 | 47.73 |
| AT1G55190.1 | Thale cress | plasma membrane | 41.67 | 47.62 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 41.2 | 47.34 |
| CDY23634 | Canola | plasma membrane | 38.43 | 45.86 |
| CDX97509 | Canola | plasma membrane | 38.43 | 45.86 |
| CDY08228 | Canola | plasma membrane | 39.81 | 45.5 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 39.81 | 45.5 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 38.89 | 44.92 |
| AT3G13710.1 | Thale cress | plasma membrane | 38.89 | 44.68 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 38.89 | 44.44 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 38.43 | 44.38 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 28.7 | 44.29 |
| Bra027406.1-P | Field mustard | plasma membrane | 37.04 | 44.2 |
| VIT_11s0016g02330.t01 | Wine grape | plastid | 37.04 | 42.33 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 35.65 | 42.31 |
| CDY51735 | Canola | plasma membrane | 35.65 | 42.31 |
| CDY37483 | Canola | plasma membrane | 35.19 | 41.76 |
| AT1G17700.1 | Thale cress | plasma membrane | 34.26 | 41.11 |
| CDY26225 | Canola | plasma membrane | 34.26 | 40.22 |
| Bra025954.1-P | Field mustard | plasma membrane | 33.8 | 39.67 |
| CDX81845 | Canola | plasma membrane | 32.87 | 39.23 |
| Bra031001.1-P | Field mustard | plasma membrane | 32.87 | 39.23 |
| CDY59501 | Canola | plasma membrane | 31.94 | 37.5 |
| KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 33.33 | 36.0 |
| KRH49060 | Soybean | plasma membrane | 32.87 | 35.86 |
| AT4G29658.2 | Thale cress | plastid | 27.78 | 31.58 |
| CDY06788 | Canola | plastid | 28.24 | 31.44 |
| HORVU3Hr1G088130.1 | Barley | plastid | 31.94 | 31.36 |
| Bra011125.1-P | Field mustard | mitochondrion | 24.54 | 30.29 |
| CDY43514 | Canola | mitochondrion | 24.54 | 30.29 |
| HORVU4Hr1G024530.1 | Barley | plastid | 29.63 | 28.32 |
| HORVU1Hr1G070360.1 | Barley | plastid | 28.7 | 27.93 |
| HORVU5Hr1G106520.1 | Barley | cytosol | 29.17 | 26.92 |
| CDY37482 | Canola | plastid | 25.93 | 26.79 |
| Bra021503.1-P | Field mustard | plastid | 25.46 | 26.44 |
| CDY51734 | Canola | plastid | 25.46 | 26.32 |
| HORVU0Hr1G013770.1 | Barley | mitochondrion | 36.11 | 24.3 |
| CDY55133 | Canola | plasma membrane | 23.15 | 23.47 |
| Bra021502.1-P | Field mustard | plastid | 22.69 | 22.9 |
| CDY51733 | Canola | plastid | 22.69 | 22.9 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 25.46 | 22.73 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 10.19 | 19.64 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G028520.1 | EnsemblPlantsGene:HORVU1Hr1G028520 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Prenylated_rab_accept_PRA1 |
| PANTHER:PTHR19317 | PANTHER:PTHR19317:SF10 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B464569 |
| UniProt:A0A287F0G9 | MapMan:22.8.4.3.2 | : | : | : | : |
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A287F0G9]
Coordinates
chrchr1H:+:155955416..155956363
Molecular Weight (calculated)
23360.8 Da
IEP (calculated)
10.071
GRAVY (calculated)
0.496
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: KFSPLHPHTF SSYRRRPAVT SALQPAMSKY GTIPISSSSD APPPGSSPLD FISRAKARGA SALATRQPWR ELADPKAIAL PRGLGDAYLR ARANLAHFSM
101: NYAIVVLGVV FLSLLWHPFS LIVFLACMVA WVFLYFLRDV PLALFGHTIG DGVVLAVLSA VTLILLLLTG ATGNILTSLL VGLVLVLLHA LLHRPADSID
201: EEAGRWYTPV TPPPPY
101: NYAIVVLGVV FLSLLWHPFS LIVFLACMVA WVFLYFLRDV PLALFGHTIG DGVVLAVLSA VTLILLLLTG ATGNILTSLL VGLVLVLLHA LLHRPADSID
201: EEAGRWYTPV TPPPPY
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.