Factsheet for HORVU3Hr1G070650.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018210.6
HORVU6Hr1G036020.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	HORVU0Hr1G018210.6	AT2G44950.1	21798944
AT5G09450.1	HORVU6Hr1G036020.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G085940.2	Barley	cytosol	95.17	81.18
HORVU2Hr1G079080.2	Barley	cytosol	82.76	43.64
Os04t0450200-01	Rice	cytosol	75.86	37.67
TraesCS2A01G318100.1	Wheat	mitochondrion	85.52	29.59
TraesCS2B01G336200.1	Wheat	mitochondrion	84.14	29.12
TraesCS2D01G315700.1	Wheat	mitochondrion	84.14	27.66
EES10908	Sorghum	mitochondrion	77.93	27.23
VIT_11s0078g00180.t01	Wine grape	cytosol	35.86	27.23
Zm00001d003500_P001	Maize	mitochondrion	68.28	23.4
GSMUA_Achr10P...	Banana	cytosol	51.72	17.01
KRH43872	Soybean	mitochondrion	45.52	16.71
KRH10583	Soybean	mitochondrion	45.52	16.54
Solyc10g047370.1.1	Tomato	mitochondrion	44.83	16.29
PGSC0003DMT400011461	Potato	mitochondrion	44.83	16.25
AT5G09450.1	Thale cress	mitochondrion	42.76	15.16
CDY44801	Canola	mitochondrion	41.38	14.85
Bra028632.1-P	Field mustard	mitochondrion	40.69	14.6
HORVU5Hr1G027150.1	Barley	mitochondrion	30.34	8.56
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	27.59	7.26
HORVU6Hr1G085430.2	Barley	mitochondrion	25.52	6.99
HORVU2Hr1G093220.7	Barley	mitochondrion	24.83	6.87
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	24.14	6.74
HORVU6Hr1G016390.10	Barley	plastid	24.83	6.47
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	21.38	6.19
HORVU6Hr1G016360.7	Barley	mitochondrion	20.0	5.8
HORVU7Hr1G066420.6	Barley	plastid	17.24	4.75
HORVU3Hr1G040710.1	Barley	mitochondrion	19.31	4.58

Protein Annotations

EnsemblPlants:HORVU3Hr1G070650.1	EnsemblPlantsGene:HORVU3Hr1G070650	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494
PFAM:PF13812	UniParc:UPI000B47855D	UniProt:A0A287LJR6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr3H:-:534416740..534417902

Molecular Weight (calculated)

16458.6 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.279

Length

145 amino acids

Sequence
(BLAST)

001: MIDKAERLFQ RMKDADLPID VLVYNEMITL YISVEELDKV PTLAKELKRQ NVSPHLFTYN LRISASIASM DLEAFKGILD EISKDPNSNE GWMLYRNLAS
101: IYVDASQLVS SRNSLVEAKA KISQREWITY DSSSSCTPDS ATWTG

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.