Factsheet for Solyc10g047370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g022030.2.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT5G09450.1	Solyc08g022030.2.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011461	Potato	mitochondrion	97.24	97.0
VIT_11s0078g00180.t01	Wine grape	cytosol	30.08	62.83
KRH43872	Soybean	mitochondrion	61.4	62.03
KRH10583	Soybean	mitochondrion	61.9	61.9
Bra028632.1-P	Field mustard	mitochondrion	55.39	54.7
CDY44801	Canola	mitochondrion	54.89	54.21
AT5G09450.1	Thale cress	mitochondrion	54.89	53.55
Os04t0450200-01	Rice	cytosol	38.1	52.05
GSMUA_Achr10P...	Banana	cytosol	54.14	48.98
EES10908	Sorghum	mitochondrion	48.12	46.27
HORVU3Hr1G070650.1	Barley	cytosol	16.29	44.83
TraesCS2A01G318100.1	Wheat	mitochondrion	45.11	42.96
HORVU2Hr1G079080.2	Barley	cytosol	29.32	42.55
TraesCS2B01G336200.1	Wheat	mitochondrion	44.36	42.24
Zm00001d003500_P001	Maize	mitochondrion	44.36	41.84
TraesCS2D01G315700.1	Wheat	mitochondrion	45.61	41.27
HORVU1Hr1G085940.2	Barley	cytosol	17.29	40.59
Solyc06g005140.2.1	Tomato	mitochondrion	32.33	24.81
Solyc01g081320.2.1	Tomato	plastid	28.57	22.01
Solyc11g006380.1.1	Tomato	cytosol	26.82	21.75
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	26.57	21.5
Solyc01g089870.2.1	Tomato	nucleus	29.32	21.47
Solyc01g100580.2.1	Tomato	mitochondrion	25.31	20.95
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	25.06	20.62
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	23.06	20.26
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	24.56	19.96
Solyc07g063220.2.1	Tomato	plastid	26.32	18.92
Solyc07g054100.1.1	Tomato	cytosol	14.79	18.27
Solyc06g071900.2.1	Tomato	mitochondrion	21.8	16.26
Solyc12g020050.1.1	Tomato	plastid	21.3	13.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4D000
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc10g047370.1
EnsemblPlants:Solyc10g047370.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002769D55	:	:

Description

No Description!

Coordinates

chr10:-:40635563..40639736

Molecular Weight (calculated)

45854.0 Da

IEP (calculated)

5.837

GRAVY (calculated)

-0.315

Length

399 amino acids

Sequence
(BLAST)

001: MAARSIFLKL TRNARGREKS LFRSFTTTEV VYEDSPNSSE EERGEIPDDL KSRIFSLRLP KRSATNVLQR WVGEGRVISI SDLRHISKEL RKSRRFKHAL
101: EISEWLVYHN QDEALDSDYA IRIDLMTKIF GIDSAERYFE GLPTTVKTTE TCTALLHSYA SLRLTEKAED LYERMKEANL SLNTVTYNEM MTLYMSVGQL
201: EKVPLIVEEM KLQKVAPDLF TYNLWVSSCA AALNIDEVRR ILDEISRGSD SGEQWIRYMN LVNIYITSGN LVNSGLNSVV ESEKGITQRE WISYDFLIIL
301: YGALGNNEKL DQIWKSLRMT NQKMTSRNYV CILSSYLMLG HMKEAGEIID QWKLSAATAF DRSSCNRLLK AYKEVGLEES AVAFRLLLIQ KGCDEIEES

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.