CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05183
KRH15859
KRH30315
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	KRH30315	AT2G44950.1	21798944
AT5G09450.1	KRH75261	AT2G44950.1	21798944
AT5G09450.1	KRH05183	AT4G32190.1	21798944
AT5G09450.1	KRH15859	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10583	Soybean	mitochondrion	95.19	94.24
VIT_11s0078g00180.t01	Wine grape	cytosol	32.91	68.06
Solyc10g047370.1.1	Tomato	mitochondrion	62.03	61.4
PGSC0003DMT400011461	Potato	mitochondrion	62.03	61.25
AT5G09450.1	Thale cress	mitochondrion	60.51	58.44
Bra028632.1-P	Field mustard	mitochondrion	58.23	56.93
CDY44801	Canola	mitochondrion	57.97	56.68
Os04t0450200-01	Rice	cytosol	38.48	52.05
GSMUA_Achr10P...	Banana	cytosol	56.46	50.57
EES10908	Sorghum	mitochondrion	48.35	46.02
HORVU3Hr1G070650.1	Barley	cytosol	16.71	45.52
TraesCS2A01G318100.1	Wheat	mitochondrion	47.85	45.11
Zm00001d003500_P001	Maize	mitochondrion	46.84	43.74
TraesCS2B01G336200.1	Wheat	mitochondrion	46.33	43.68
TraesCS2D01G315700.1	Wheat	mitochondrion	47.34	42.4
HORVU1Hr1G085940.2	Barley	cytosol	18.23	42.35
HORVU2Hr1G079080.2	Barley	cytosol	28.61	41.09
KRH10858	Soybean	mitochondrion	29.62	24.07
KRH55328	Soybean	plastid	27.59	22.15
KRH45616	Soybean	nucleus	27.34	22.04
KRH69203	Soybean	cytosol	20.51	20.82
KRH52991	Soybean	mitochondrion	25.57	20.36
KRH31780	Soybean	mitochondrion	24.05	19.96
KRH26940	Soybean	cytosol	24.81	19.76
KRH22399	Soybean	cytosol	23.8	19.75
KRG99413	Soybean	cytosol, mitochondrion	16.71	18.8
KRH48889	Soybean	plastid	25.82	18.68
KRH66454	Soybean	plastid	26.08	18.56
KRH62276	Soybean	mitochondrion	24.56	16.87
KRH23068	Soybean	mitochondrion	21.52	16.77
KRH10262	Soybean	mitochondrion	21.52	16.77
KRH66764	Soybean	cytosol	17.47	16.63
KRG95098	Soybean	mitochondrion	22.53	14.59
KRH69049	Soybean	mitochondrion	22.03	14.29
KRH31614	Soybean	mitochondrion	21.01	13.83

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100779635	MapMan:35.1	EMBL:ACUP02004901	EnsemblPlantsGene:GLYMA_08G176700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1KUA9	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH43872	ProteinID:KRH43872	ProteinID:KRH43872.1
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023386DC	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:14166968..14170110

Molecular Weight (calculated)

45194.3 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.229

Length

395 amino acids

Sequence
(BLAST)

001: MAHCSLFLSL RRNSGLACLL NRTRFVSSGA VSSDLVEESV EGVDDDLRSR IFRLRLPKRS ATNVLQKWVL QGNPVTLSQL RDISKELRRS QRYKHALEIS
101: EWMVSHEEYE LSDSDYAARI DLTTKVFGID AAERYFEGLP LATKTAETYT ALLHSYAGAK LTKKAEELYQ RIKDSNLSFD ALTYNEMMTL YMSVGQFEKV
201: PSVVEELKQQ KVSPDIFTYN LWISYCAAIL NIDEVRRILD EMSHGAGSNE SWIRYLNLAN IYISVGHLDN ASSNTLVETE KRITQRQWIT YDFLIILYGG
301: LGSKDKLDQI WNSLRMTKQK MISRNYICII SSYLMLGHTK EVGEVIDQWK QSTTTDFDML ACKKIMVAFR DMGLAEIANN LNMILIEKNL SLGSD

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.