CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0597g00040.t01	Wine grape	extracellular	69.75	67.0
Bra038762.1-P	Field mustard	mitochondrion	57.41	57.17
CDX98698	Canola	mitochondrion	57.0	56.76
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	57.0	56.42
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	56.38	55.8
AT4G21705.1	Thale cress	mitochondrion	56.17	55.49
GSMUA_Achr1P02980_001	Banana	mitochondrion	54.94	50.38
KRH55328	Soybean	plastid	48.35	47.76
EER91421	Sorghum	mitochondrion	48.35	47.38
Os07t0598500-01	Rice	mitochondrion	48.35	46.44
Zm00001d013923_P001	Maize	mitochondrion	46.71	45.4
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	47.74	44.7
TraesCS1A01G168800.1	Wheat	mitochondrion	46.91	44.62
TraesCS1D01G166800.1	Wheat	mitochondrion	46.71	44.42
TraesCS1B01G188100.1	Wheat	mitochondrion	46.71	44.42
EER90330	Sorghum	mitochondrion	45.88	44.42
EER90329	Sorghum	mitochondrion	43.83	42.35
CDX94049	Canola	cytosol	57.2	39.6
KRH31780	Soybean	mitochondrion	29.42	30.04
KRH43872	Soybean	mitochondrion	24.07	29.62
KRH45616	Soybean	nucleus	29.63	29.39
KRH10583	Soybean	mitochondrion	24.07	29.32
KRH69203	Soybean	cytosol	23.25	29.05
KRH22399	Soybean	cytosol	28.19	28.78
KRH48889	Soybean	plastid	31.89	28.39
KRH26940	Soybean	cytosol	28.4	27.82
KRH66454	Soybean	plastid	31.48	27.57
KRH52991	Soybean	mitochondrion	27.37	26.81
KRH66764	Soybean	cytosol	22.02	25.78
KRG99413	Soybean	cytosol, mitochondrion	18.31	25.36
KRH62276	Soybean	mitochondrion	27.98	23.65
KRH10262	Soybean	mitochondrion	21.4	20.51
KRG95098	Soybean	mitochondrion	25.72	20.49
KRH23068	Soybean	mitochondrion	20.58	19.72
KRH31614	Soybean	mitochondrion	24.28	19.67
KRH69049	Soybean	mitochondrion	24.07	19.21

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100805658	MapMan:35.1	EMBL:ACUP02009162	EnsemblPlantsGene:GLYMA_15G073300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1MEH9	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH10858	ProteinID:KRH10858	ProteinID:KRH10858.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1638	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233C124	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:5615008..5618925

Molecular Weight (calculated)

55637.1 Da

IEP (calculated)

9.146

GRAVY (calculated)

-0.429

Length

486 amino acids

Sequence
(BLAST)

001: MIRRIIAVVS RSYYTSRSKK PSLYSKISPL GNPNTSVVPV LDDWVFKGNK LRVAELQRII RDLRKRSRFS QALQISEWMH NKGVCIFSPT EYAVHLDLIG
101: KVHGFSSAET YFDALKDQHK TNKTYGALLN CYVRQRQTDK ALSHLQKMKD LGFASSPLTY NDIMCLYTNI GQHEKVPDVL REMKQNQVLP DNFSYRICIN
201: SYGVRSDFGG VERVLKEMET QPNIVMDWNT YSIAANFYIK AGLTRDAVCA LRKSEERLDN KDGQGYNHLI SLYAQLGLKN EVMRIWDLEK NACKRCINRD
301: FTTLLESLVK LGELDEAEKI LKEWESSDNC YDFGIPSIVI IGYSQKGLHE KALAMLEELQ NKEKVTTPNC WSIVAGGYIH KGEMEKAFKC FKTALSLYVE
401: NKGWKPNAKV IAELLRWIGD NGSVEDAEVL VSLLRNAVPV NRQMYHTLIK TYIRGGKEVD DLLGRMEKDG IDENKETKKI INKKNA

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.