CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013923_P001	Maize	mitochondrion	86.9	86.2
EER90330	Sorghum	mitochondrion	82.66	81.67
EER90329	Sorghum	mitochondrion	78.02	76.94
Os07t0598500-01	Rice	mitochondrion	77.42	75.89
TraesCS1B01G188100.1	Wheat	mitochondrion	77.02	74.76
TraesCS1D01G166800.1	Wheat	mitochondrion	76.61	74.36
TraesCS1A01G168800.1	Wheat	mitochondrion	76.41	74.17
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	75.6	72.25
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.65	52.08
KRH10858	Soybean	mitochondrion	47.38	48.35
VIT_10s0597g00040.t01	Wine grape	extracellular	47.78	46.84
PGSC0003DMT400032340	Potato	mitochondrion	45.16	46.28
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	46.77	46.03
KRH55328	Soybean	plastid	43.15	43.5
CDX98698	Canola	mitochondrion	42.74	43.44
AT4G21705.1	Thale cress	mitochondrion	42.54	42.89
Bra038762.1-P	Field mustard	mitochondrion	41.94	42.62
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	41.73	42.16
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	41.53	41.96
Solyc07g063220.2.1	Tomato	plastid	44.35	39.64
CDX94049	Canola	cytosol	42.34	29.91
OQU91552	Sorghum	mitochondrion	28.02	27.25
EES02848	Sorghum	mitochondrion	29.03	27.17
EER87766	Sorghum	cytosol	29.23	27.05
EES12592	Sorghum	plastid	27.62	26.6
EES07683	Sorghum	mitochondrion	26.21	24.67
EES10908	Sorghum	mitochondrion	20.36	24.34
OQU79216	Sorghum	cytosol	26.41	23.86
OQU86720	Sorghum	mitochondrion	22.78	18.43
OQU88705	Sorghum	plastid	22.78	17.74
OQU79953	Sorghum	cytosol	19.35	15.36

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8065207	UniProt:C5WWG1	ncoils:Coil	EnsemblPlants:EER91421
ProteinID:EER91421	ProteinID:EER91421.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G203600
unigene:Sbi.2549	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8248F	RefSeq:XP_002464423.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:18536270..18544339

Molecular Weight (calculated)

56375.1 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.340

Length

496 amino acids

Sequence
(BLAST)

001: MASLFAAGRR LLSLGRRGVL LPVPRSRAVA TSSRSNSEEE RPPQSLQSTL WPLGHPCTLL VPEIELWAAR PRNRLRAVEL QRIVRELRKR HRHRQALEVS
101: EWMNLKGHVK FLPKDHAIHL DLIGQVHGVG AAETYFNNLS DKDKTEKPYG ALLNCYTREL LVDKALAHFQ NMKELGFVFS ALSYNNLMGL YTNIGQHERV
201: PMVMAEMKRD GIVPDNFSYR ICINSYGIRA DFFGLENTLE EMECEPQIVV DWNTYAVVAS NYIKGYLREK AYSALRKAEA KMDKKDGDAY GHLISLYGHL
301: GDKLEVKRLW ALHMLNCKRY INKDYTNMLA VLVKLDEITE AEDLLKEWES SKNAFDFQVP NVLLTGYRQK GLLDKAETLL DGFLKKGKTP TSTSWWIVAI
401: GYAEKGDVAK AYELTKNALS VFAPNSGWIP RPSIIEMILK YLGNEGEVKD VEAFVNLLKV AVPMNSDMTE ALSRARAREE RKAEEATEAP REDIIA

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.