Factsheet for HORVU1Hr1G045170.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G168800.1	Wheat	mitochondrion	92.49	93.93
TraesCS1D01G166800.1	Wheat	mitochondrion	92.29	93.74
TraesCS1B01G188100.1	Wheat	mitochondrion	91.91	93.35
Os07t0598500-01	Rice	mitochondrion	79.0	81.03
EER91421	Sorghum	mitochondrion	72.25	75.6
Zm00001d013923_P001	Maize	mitochondrion	71.1	73.8
EER90330	Sorghum	mitochondrion	71.29	73.71
EER90329	Sorghum	mitochondrion	66.09	68.19
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.49	54.34
VIT_10s0597g00040.t01	Wine grape	extracellular	46.63	47.83
KRH10858	Soybean	mitochondrion	44.7	47.74
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	45.86	47.22
PGSC0003DMT400032340	Potato	mitochondrion	43.93	47.11
CDX98698	Canola	mitochondrion	42.39	45.08
Bra038762.1-P	Field mustard	mitochondrion	41.62	44.26
AT4G21705.1	Thale cress	mitochondrion	41.81	44.11
KRH55328	Soybean	plastid	40.85	43.09
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	39.11	41.34
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	38.92	41.14
Solyc07g063220.2.1	Tomato	plastid	43.93	41.08
CDX94049	Canola	cytosol	41.62	30.77
HORVU2Hr1G093220.7	Barley	mitochondrion	28.13	27.86
HORVU6Hr1G016360.7	Barley	mitochondrion	26.59	27.6
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	28.71	27.04
HORVU5Hr1G027150.1	Barley	mitochondrion	26.2	26.46
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	24.66	25.55
HORVU6Hr1G016390.10	Barley	plastid	27.36	25.54
HORVU6Hr1G085430.2	Barley	mitochondrion	25.24	24.76
HORVU3Hr1G070650.1	Barley	cytosol	6.74	24.14
HORVU1Hr1G085940.2	Barley	cytosol	7.13	21.76
HORVU2Hr1G079080.2	Barley	cytosol	11.37	21.45
HORVU3Hr1G040710.1	Barley	mitochondrion	21.97	18.63
HORVU7Hr1G066420.6	Barley	plastid	17.15	16.92

Protein Annotations

EnsemblPlants:HORVU1Hr1G045170.4	EnsemblPlantsGene:HORVU1Hr1G045170	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI000B472DBA	UniProt:A0A287FDC1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:328120520..328123033

Molecular Weight (calculated)

58902.1 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.467

Length

519 amino acids

Sequence
(BLAST)

001: KEEKKYHAMA SSSLFAARRR LLHFGRGRLL QGRVRPQNPT PLLLPVRAAS SPHSNSAERP PRRPPGLQST LWPLGHPDTL LVPEIERWAD KPGNRLRPVE
101: LERIVKELRK RRRHRQALQV SEWMSAKGHV RFLPKDYAVH LDLIGQVHGI GAAEAYFNTL PDKDKTEKPY GALLNCYTRE LMVDGSLAHF QKMKELGFVF
201: SSLPYNNLMG LYTNIGQHEK VPSVIAEMKS SGIMPDNFSY RICINSYGTR ADFFGMENTL EDMECEPQIV VDWNTYAVVA SNYIKGNLRE KAISALKKAE
301: AKIDIKDSDT YNHLISLYGQ LGDKSEMRRL WGLQMSNCKR HINKDYTTML AMLVRLDEIE EAEALLKEWE SSENAFDFHV PNVLLTGYRH KDMLDKAEAL
401: LDDFLKKGKM PPSTSWAIVA IGYAEKGDCA KAYELIKNAL CVYVPRSGWI PRPAMIEMIL KYLGDEGDLK DVETFVQLLQ AAMPMNSHMT DALSRARMRE
501: EKKSGDAEKE ALSSTKASG

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.