Factsheet for HORVU6Hr1G016390.10

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G091100.1	Wheat	mitochondrion	79.14	86.78
TraesCS6D01G079300.1	Wheat	mitochondrion	78.42	85.66
TraesCS6A01G091200.2	Wheat	cytosol	55.94	85.21
TraesCS6B01G119100.1	Wheat	mitochondrion	75.72	85.05
TraesCS6D01G079400.1	Wheat	plastid	66.01	81.37
HORVU6Hr1G016360.7	Barley	mitochondrion	64.93	72.2
PGSC0003DMT400023279	Potato	mitochondrion	32.19	36.16
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	32.19	35.94
VIT_07s0005g01630.t01	Wine grape	mitochondrion	30.4	35.81
KRH69203	Soybean	cytosol	24.28	34.7
KRH31780	Soybean	mitochondrion	29.32	34.24
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	29.5	33.81
AT4G01990.1	Thale cress	mitochondrion	30.4	33.67
Bra033321.1-P	Field mustard	mitochondrion	31.12	33.59
Bra000902.1-P	Field mustard	mitochondrion	30.22	33.53
CDX90962	Canola	mitochondrion	30.22	33.53
CDX91822	Canola	mitochondrion	30.04	33.4
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	30.04	33.33
CDY15237	Canola	mitochondrion	30.58	33.14
CDX89976	Canola	mitochondrion	30.4	32.82
AT1G02370.1	Thale cress	mitochondrion	29.86	30.91
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	30.22	30.49
PGSC0003DMT400007271	Potato	mitochondrion	26.26	30.23
Solyc01g100580.2.1	Tomato	mitochondrion	26.08	30.08
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	25.54	27.36
HORVU2Hr1G093220.7	Barley	mitochondrion	25.0	26.53
HORVU5Hr1G027150.1	Barley	mitochondrion	23.38	25.29
HORVU3Hr1G070650.1	Barley	cytosol	6.47	24.83
HORVU2Hr1G079080.2	Barley	cytosol	11.51	23.27
HORVU1Hr1G085940.2	Barley	cytosol	7.01	22.94
HORVU6Hr1G085430.2	Barley	mitochondrion	21.4	22.5
HORVU3Hr1G040710.1	Barley	mitochondrion	19.6	17.81
HORVU7Hr1G066420.6	Barley	plastid	15.47	16.35

Protein Annotations

EnsemblPlants:HORVU6Hr1G016390.10	EnsemblPlantsGene:HORVU6Hr1G016390	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF942	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000B46FE0F	UniProt:A0A287TFJ5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr6H:-:36896750..36900632

Molecular Weight (calculated)

63258.3 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.287

Length

556 amino acids

Sequence
(BLAST)

001: MGWDTIVRIF CCVKLVLSIF FLSRKDRARN RSFAASHPKT STNPRNAAEP PMLRTAAAAA ARRRVSVAPA RFAHELAQAQ AQPAIPARDG LEPSWVPLYR
101: RISILCGRPP GTVAAEMDSY LRQRRPLSAD QIVAYVRRLR KFRSNAWALE LMDWMESRGA KLSLGNQALR LGLVSRVHGI QAAEEYFWSL PDKSKKTYSC
201: LLNCYGEHGM ACKGLELYEK MKVMGVVPNT LLYNNLMTLY QKAGQPEKIP STFEEMRESG ISANNFTYFT LIESYITMND LEAAEKGLEE LQKVAPLNWS
301: LYTLMANSYV KLELCGKAEI ALKKAEEVMN KAELSSWYFL LSIYARCGNA TEVKRIWESL KSTFKKCLNK SYLVMLEALS TIDDFESLQQ IFQEWESSHE
401: HYDMRITNVM IKAYLDKGMI DEAEAIRQRT MSQGHCNVRT VYIFAEFYLD KSDVTAALEI LRDSKNMVTA DKWVRSEKLM SRFLKHYEES KDVDGVESFC
501: DCLKKLECLD AEAYEGMVRT YIAAGRTNPS IAQRIEDDGI HIGPETTKLL ESVSGN

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.