Factsheet for AT1G02370.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15237	Canola	mitochondrion	78.77	82.46
Bra033321.1-P	Field mustard	mitochondrion	78.58	81.94
CDX89976	Canola	mitochondrion	77.84	81.17
AT4G01990.1	Thale cress	mitochondrion	60.34	64.54
VIT_07s0005g01630.t01	Wine grape	mitochondrion	44.88	51.06
PGSC0003DMT400023279	Potato	mitochondrion	43.95	47.68
KRH31780	Soybean	mitochondrion	40.78	46.01
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	40.41	44.74
KRH69203	Soybean	cytosol	32.22	44.47
GSMUA_Achr11P...	Banana	mitochondrion	37.99	39.31
Zm00001d009122_P001	Maize	mitochondrion	35.57	37.09
EES02848	Sorghum	mitochondrion	36.13	36.6
TraesCS2B01G584000.2	Wheat	mitochondrion	36.5	35.44
TraesCS2A01G552700.1	Wheat	mitochondrion	35.94	35.03
AT1G60770.1	Thale cress	cytosol	31.84	34.83
TraesCS2D01G553300.1	Wheat	mitochondrion	36.31	34.82
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	32.4	34.73
Os01t0301000-01	Rice	mitochondrion	33.15	34.1
TraesCS6B01G118900.1	Wheat	cytosol	26.07	33.65
TraesCS2B01G583500.1	Wheat	mitochondrion	29.98	33.54
TraesCS6A01G091100.1	Wheat	mitochondrion	30.91	32.74
TraesCS6D01G079300.1	Wheat	mitochondrion	30.73	32.42
TraesCS6B01G119100.1	Wheat	mitochondrion	29.8	32.32
TraesCS6A01G091000.1	Wheat	mitochondrion	30.35	31.96
Os01t0301700-01	Rice	mitochondrion	29.98	31.94
TraesCS6D01G079100.1	Wheat	mitochondrion	28.31	31.73
Os01t0301500-01	Rice	cytosol, mitochondrion	28.12	31.2
TraesCS6B01G119000.1	Wheat	mitochondrion	27.75	31.11
TraesCS6A01G090900.1	Wheat	mitochondrion	27.75	31.11
TraesCS6D01G079200.1	Wheat	plastid	31.28	31.05
TraesCS6A01G090800.2	Wheat	mitochondrion	27.75	30.91
TraesCS2A01G552100.1	Wheat	mitochondrion	30.73	30.0
HORVU6Hr1G016390.10	Barley	plastid	30.91	29.86
TraesCS2D01G553100.1	Wheat	mitochondrion	30.17	29.72
HORVU6Hr1G016360.7	Barley	mitochondrion	27.37	29.4
TraesCS6A01G091200.2	Wheat	cytosol	19.93	29.32
AT4G21705.1	Thale cress	mitochondrion	26.82	29.27
AT1G02150.1	Thale cress	mitochondrion	28.49	29.2
AT4G02820.1	Thale cress	mitochondrion	26.63	26.88
TraesCS6D01G079400.1	Wheat	plastid	22.53	26.83
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	23.09	25.25
AT5G09450.1	Thale cress	mitochondrion	18.99	24.94
AT2G20710.1	Thale cress	mitochondrion	22.72	24.9
AT1G43010.1	Thale cress	mitochondrion	10.06	21.01
AT1G28020.1	Thale cress	cytosol, plastid	19.18	20.85
AT2G20720.1	Thale cress	cytosol	11.17	20.07
AT1G07590.1	Thale cress	mitochondrion	18.06	18.16
AT3G11380.1	Thale cress	mitochondrion	17.5	17.38
AT1G80270.2	Thale cress	mitochondrion	18.81	16.95
AT1G15480.1	Thale cress	mitochondrion	18.25	16.5
AT1G28000.1	Thale cress	mitochondrion	11.55	15.98
AT3G11350.1	Thale cress	mitochondrion	9.87	14.76
AT3G15590.2	Thale cress	cytosol, mitochondrion	16.39	14.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:837735	UniProt:A0A178W339	ProteinID:AAG00888.1	ProteinID:AEE27421.1
ArrayExpress:AT1G02370	EnsemblPlantsGene:AT1G02370	RefSeq:AT1G02370	TAIR:AT1G02370	RefSeq:AT1G02370-TAIR-G	EnsemblPlants:AT1G02370.1
TAIR:AT1G02370.1	EMBL:AY065448	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_171739.1	ProteinID:OAP12121.1	PFAM:PF01535	PO:PO:0000037
PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007057
PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020100
PO:PO:0025022	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	UniProt:Q9FZ24
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000A885E	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]

Coordinates

chr1:+:474373..476612

Molecular Weight (calculated)

60356.4 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.323

Length

537 amino acids

Sequence
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.