Factsheet for TraesCS2D01G553100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G552100.1	Wheat	mitochondrion	95.05	94.18
TraesCS2B01G583500.1	Wheat	mitochondrion	79.45	90.21
TraesCS6D01G079100.1	Wheat	mitochondrion	50.28	57.2
Os01t0301700-01	Rice	mitochondrion	51.74	55.95
TraesCS6D01G079300.1	Wheat	mitochondrion	51.93	55.6
TraesCS6D01G079200.1	Wheat	plastid	52.11	52.5
TraesCS6D01G079400.1	Wheat	plastid	40.55	49.0
VIT_07s0005g01630.t01	Wine grape	mitochondrion	32.66	37.71
TraesCS2D01G553300.1	Wheat	mitochondrion	35.6	34.64
PGSC0003DMT400023279	Potato	mitochondrion	31.38	34.55
AT4G01990.1	Thale cress	mitochondrion	31.38	34.06
Bra033321.1-P	Field mustard	mitochondrion	32.11	33.98
CDY15237	Canola	mitochondrion	31.74	33.72
CDX89976	Canola	mitochondrion	31.74	33.59
CDX91822	Canola	mitochondrion	30.09	32.8
KRH31780	Soybean	mitochondrion	28.44	32.56
CDX90962	Canola	mitochondrion	29.91	32.53
Bra000902.1-P	Field mustard	mitochondrion	29.91	32.53
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	29.72	32.53
KRH69203	Soybean	cytosol	23.12	32.39
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	28.62	32.16
Solyc01g100580.2.1	Tomato	mitochondrion	28.44	32.16
PGSC0003DMT400007271	Potato	mitochondrion	27.89	31.47
TraesCS1D01G166800.1	Wheat	mitochondrion	28.99	30.92
AT1G02370.1	Thale cress	mitochondrion	29.72	30.17
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.26	28.68
TraesCS2D01G389900.1	Wheat	plastid	25.69	27.4
TraesCS1D01G166700.1	Wheat	mitochondrion	24.59	27.07
TraesCS5D01G112000.1	Wheat	mitochondrion	24.95	26.67
TraesCS6D01G341400.1	Wheat	mitochondrion	21.83	22.88
TraesCS2D01G315700.1	Wheat	mitochondrion	17.61	21.77
TraesCS3D01G195000.1	Wheat	mitochondrion	18.9	16.8
TraesCS7D01G293300.1	Wheat	mitochondrion	15.41	16.37

Protein Annotations

EnsemblPlants:TraesCS2D01G553100.1	EnsemblPlantsGene:TraesCS2D01G553100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:627959816..627964542

Molecular Weight (calculated)

61906.6 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.374

Length

545 amino acids

Sequence
(BLAST)

001: MARAALLRSL PPRRVRPFSS PAAAPSPLTG GGSSAPRAAQ GRELGGAVGF RTEEVPEFSP ESPMLRAAAE AALRRVSPAP AGPVHAQYRQ GPVLRVAWLP
101: LYRRLSKLPP AAPLGCVAAE LDRWLRERQP LCEHQLLFYV RKLRNFRQHR RALELIDWME ARGAYLLPGD HALRLDLVCK VNGLEAAEEY FLSLPDMHKS
201: VKTYSSLLNC YAEHKPEKGL ELYEKMRTMN IVPNTLVYKN LMSLYLKAGQ PEKVLKTFEE MRGNGIQTDN FTYCILTESH IMVNGLESTK KFLEDLEKSI
301: PVHWSLYTVL ANNYNKVGQF DKAELALKKA EEVMDKGEMF AWHNLLSLYA SSGNLSEVKR LWVSLRSELK ICSNRSYLVM LSSLKKLDDF DSMQQVFQEW
401: EFTQQSFDMR IPNVMIRAYL AKDMTDEAEA LRQAAMAQGR SDPVTFYIFA ESYLEKSRTD AALQVWRDAE KIVNTPNWVP RPELVKRFLK HFEEAKDVDG
501: MESFCACLEK LECLDADARD ALSRTYVAAG RTNPSYHSPD GRRPG

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.