Factsheet for TraesCS5D01G112000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G104900.1	Wheat	mitochondrion	98.04	98.04
TraesCS5A01G099700.1	Wheat	mitochondrion	97.06	97.06
HORVU5Hr1G027150.1	Barley	mitochondrion	95.49	94.75
Os12t0527900-01	Rice	mitochondrion	85.49	84.82
Zm00001d023915_P001	Maize	mitochondrion	80.78	82.24
OQU79216	Sorghum	cytosol	82.16	76.32
GSMUA_Achr1P17120_001	Banana	mitochondrion	60.98	59.81
VIT_16s0039g02800.t01	Wine grape	cytosol	50.39	51.61
PGSC0003DMT400092266	Potato	mitochondrion	17.84	49.19
Solyc06g005140.2.1	Tomato	mitochondrion	49.61	48.65
PGSC0003DMT400077284	Potato	mitochondrion	49.8	48.47
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	48.43	47.14
Bra018528.1-P	Field mustard	mitochondrion	47.45	47.08
CDX91277	Canola	mitochondrion	47.84	47.01
CDX97288	Canola	mitochondrion	47.25	46.89
AT4G02820.1	Thale cress	mitochondrion	48.43	46.43
PGSC0003DMT400031020	Potato	cytosol	10.2	43.7
PGSC0003DMT400031016	Potato	cytosol	24.31	40.79
TraesCS6D01G341400.1	Wheat	mitochondrion	31.76	31.15
TraesCS2D01G389900.1	Wheat	plastid	30.2	30.14
TraesCS1D01G166700.1	Wheat	mitochondrion	29.02	29.9
TraesCS6D01G079300.1	Wheat	mitochondrion	27.45	27.5
TraesCS1D01G166800.1	Wheat	mitochondrion	27.45	27.4
TraesCS2D01G315700.1	Wheat	mitochondrion	23.33	26.98
TraesCS2D01G553300.1	Wheat	mitochondrion	29.61	26.96
TraesCS6D01G079100.1	Wheat	mitochondrion	25.1	26.72
TraesCS6D01G079200.1	Wheat	plastid	27.65	26.06
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.06	25.7
TraesCS2D01G553100.1	Wheat	mitochondrion	26.67	24.95
TraesCS6D01G079400.1	Wheat	plastid	20.78	23.5
TraesCS3D01G195000.1	Wheat	mitochondrion	23.92	19.9
TraesCS7D01G293300.1	Wheat	mitochondrion	18.82	18.71
CDY36566	Canola	mitochondrion	21.37	18.14
CDY36565	Canola	cytosol	1.37	2.09

Protein Annotations

EnsemblPlants:TraesCS5D01G112000.1	EnsemblPlantsGene:TraesCS5D01G112000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:127258575..127260226

Molecular Weight (calculated)

57817.0 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.329

Length

510 amino acids

Sequence
(BLAST)

001: MLSRRLAAAA GYARLLSASA PAASTGGVGG SSSTGGGDTL GNRLLKLIYP KRSAVVVLRR WAEEGRPVHK YQLNRVVREL RKYRRFKHAL EICEWMRTQP
101: EMRLLPGDHA VHLDLVAKVR GLASAEKFFE DVPERAKGPS TCNSLLHAYV QHGARDKAEA MLKEMAGAGY LTCALPFNHM MSLYMSTGEL EKVPEMIKEL
201: RRFTIPDLVT YNIWLTYCSR KNSVKSAEKV FDLMKDDRVV PDWMTFSLLA SIYINAGLHV KGRDALVEME KRASRKERAA FSSLLTMYAS LSDRGNLDRV
301: WSKMKQTFRK FSDAEYKCML TSLTRFGDIA AAECVYGEWE SESGTKDSRI PNTILSFYIK NGKMEKAESF LQHIVQKGVK PSYSTWELFV WGYLGNNERT
401: DKVMECLKKA LSSLEKWEPN PQLVTALFSQ IEKRGDIEAA EELLVVLREA GYVTTEIYNS VLRTYAKAEM MPLIIDERMD EDKVSMDDET RRLLKSTSKY
501: PIGEVSTIMS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.