Factsheet for TraesCS7D01G056000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G428500.1	Wheat	mitochondrion	97.95	97.59
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	97.02	94.56
Os04t0320200-01	Rice	mitochondrion	83.61	85.69
EER87766	Sorghum	cytosol	82.12	82.28
Zm00001d045492_P004	Maize	cytosol	81.38	73.32
GSMUA_Achr1P16170_001	Banana	cytosol	65.18	71.87
CDY24553	Canola	mitochondrion	34.82	64.93
VIT_00s0394g00020.t01	Wine grape	cytosol	56.24	61.76
KRH45616	Soybean	nucleus	55.68	61.02
CDY50357	Canola	mitochondrion	22.72	61.0
CDX96239	Canola	mitochondrion	55.31	60.49
CDY46999	Canola	mitochondrion	55.31	60.49
AT1G60770.1	Thale cress	cytosol	55.12	60.29
Bra027131.1-P	Field mustard	mitochondrion	54.75	59.88
CDY34141	Canola	mitochondrion	54.38	59.35
Bra031484.1-P	Field mustard	mitochondrion	54.19	59.15
Solyc11g006380.1.1	Tomato	cytosol	54.0	58.94
PGSC0003DMT400002590	Potato	cytosol	53.63	58.54
KRG99413	Soybean	cytosol, mitochondrion	36.13	55.27
CDY50358	Canola	cytosol	23.09	52.77
CDY24554	Canola	cytosol	14.15	49.67
TraesCS6D01G079300.1	Wheat	mitochondrion	30.91	32.61
TraesCS6D01G079100.1	Wheat	mitochondrion	28.68	32.15
TraesCS2D01G553300.1	Wheat	mitochondrion	32.77	31.43
TraesCS6D01G079200.1	Wheat	plastid	30.73	30.5
TraesCS6D01G079400.1	Wheat	plastid	24.39	29.05
TraesCS2D01G389900.1	Wheat	plastid	27.56	28.96
TraesCS1D01G166800.1	Wheat	mitochondrion	27.19	28.57
TraesCS2D01G553100.1	Wheat	mitochondrion	28.68	28.26
TraesCS5D01G112000.1	Wheat	mitochondrion	25.7	27.06
TraesCS1D01G166700.1	Wheat	mitochondrion	24.77	26.87
TraesCS6D01G341400.1	Wheat	mitochondrion	24.39	25.19
TraesCS2D01G315700.1	Wheat	mitochondrion	18.81	22.9
TraesCS7D01G293300.1	Wheat	mitochondrion	19.37	20.27
TraesCS3D01G195000.1	Wheat	mitochondrion	22.91	20.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS7D01G056000	EnsemblPlants:TraesCS7D01G056000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:29875279..29879059

Molecular Weight (calculated)

61471.1 Da

IEP (calculated)

9.567

GRAVY (calculated)

-0.545

Length

537 amino acids

Sequence
(BLAST)

001: MATATRAKDL ARRSPKKYVE EALYRRLFRR GSTPQAVREE VDGFLGSRKR AFKWEVAVCV RRLRRQELYR PALKLTEVMT RRGMNPTVGD QAIRLDLVAK
101: SRGIAAAEKY FMDLPETSKT HLTYGALLNC YCKELMTEKA ESLMEKMKEL NFAFTAMSYN SLMTLYTKVN QPEMVPSIIQ DMKADDVLPD VYTYNVWMRS
201: LAARQDILGV ERVIEEMTRD GRVAPDWTTY SNLASIYVDA GQSEKAEAAL KELEKRNTGN DLEAYQFLIT LYGRTQNLVE VHRVWRSLKR NNPRKANMSY
301: LNMIQVLANL KDLPAAEACF KEWEARYIRP PKTKATDAVT TETSKLEEEA STEASNNDSD VKETEDKGTE ELDLKRPKYD IRVANALMKA YVTEGMLDKA
401: IALKKRAKMR GGRLNAKTWE IFMDHYLKVG DLKNAHWCAD RAIKKGHSSG RIWVPPHDVT KTLMGYFEKK KDVDGAESFV EVLKKVQKDL GTVVFEPLVR
501: TYAAAGKKFP GMRHRLKIEN VELSEETDKL VDSICVD

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.