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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24554 Canola cytosol 51.49 79.08
CDX96239 Canola mitochondrion 97.87 46.84
Bra027131.1-P Field mustard mitochondrion 96.6 46.23
CDY46999 Canola mitochondrion 96.17 46.03
CDY34141 Canola mitochondrion 83.83 40.04
AT1G60770.1 Thale cress cytosol 82.98 39.71
VIT_00s0394g00020.t01 Wine grape cytosol 59.57 28.63
KRG99413 Soybean cytosol, mitochondrion 42.55 28.49
GSMUA_Achr1P16170_001 Banana cytosol 57.02 27.52
KRH45616 Soybean nucleus 57.02 27.35
Solyc11g006380.1.1 Tomato cytosol 56.17 26.83
PGSC0003DMT400002590 Potato cytosol 56.17 26.83
CDY35213 Canola cytosol 4.26 24.39
Os04t0320200-01 Rice mitochondrion 51.49 23.09
TraesCS7D01G056000.1 Wheat cytosol, mitochondrion, nucleus, plastid 52.77 23.09
EER87766 Sorghum cytosol 52.34 22.95
TraesCS7A01G061300.1 Wheat cytosol, mitochondrion, nucleus, plastid 52.34 22.91
TraesCS4A01G428500.1 Wheat mitochondrion 52.34 22.82
HORVU7Hr1G011310.1 Barley cytosol, mitochondrion, nucleus 52.34 22.32
Zm00001d045492_P004 Maize cytosol 52.77 20.81
CDX91822 Canola mitochondrion 34.04 16.0
CDX90962 Canola mitochondrion 34.04 15.97
CDY15237 Canola mitochondrion 34.47 15.79
CDX89976 Canola mitochondrion 34.04 15.53
CDY19721 Canola mitochondrion 27.66 13.63
CDX98698 Canola mitochondrion 28.09 13.52
CDX99984 Canola mitochondrion 27.23 13.39
CDY25035 Canola mitochondrion, plastid 26.81 12.86
CDX91277 Canola mitochondrion 27.66 12.52
CDX97288 Canola mitochondrion 27.23 12.45
CDY05574 Canola mitochondrion 27.23 12.21
CDY15126 Canola cytosol, mitochondrion, plastid 22.98 10.55
CDX90079 Canola mitochondrion 22.98 10.55
CDY09903 Canola mitochondrion 22.55 10.0
CDY06272 Canola mitochondrion 22.55 10.0
CDY03299 Canola mitochondrion 20.0 9.94
CDY39781 Canola mitochondrion 20.0 9.83
CDY24553 Canola mitochondrion 11.91 9.72
CDX94049 Canola cytosol 28.51 9.54
CDY39654 Canola mitochondrion 20.85 8.15
CDY36566 Canola mitochondrion 20.85 8.15
CDY57695 Canola mitochondrion 20.0 7.79
CDY65573 Canola mitochondrion 11.91 7.57
CDX97686 Canola plastid 19.15 7.26
CDY31943 Canola plastid 14.89 7.22
CDY05786 Canola plastid 14.89 7.22
CDY53324 Canola mitochondrion, plastid 21.7 6.98
CDY30088 Canola plastid 18.3 6.97
CDY44801 Canola mitochondrion 11.91 6.93
CDY53325 Canola mitochondrion 20.43 6.88
CDY66759 Canola cytosol 17.45 5.49
CDY71968 Canola plastid 6.81 5.48
CDX79395 Canola cytosol 20.0 4.59
CDX73880 Canola mitochondrion 7.23 3.39
CDY48421 Canola mitochondrion 4.68 2.66
CDY27647 Canola mitochondrion 4.26 2.46
CDY50357 Canola mitochondrion 0.85 1.0
CDY36565 Canola cytosol 0.85 0.6
CDY35212 Canola mitochondrion 0.43 0.36
CDY00734 Canola mitochondrion 0.0 0.0
CDY27645 Canola mitochondrion 0.0 0.0
Protein Annotations
EnsemblPlants:CDY50358EnsemblPlantsGene:GSBRNA2T00096477001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF494
PFAM:PF01535PFscan:PS51375ProteinID:CDY50358ProteinID:CDY50358.1SUPFAM:SSF48452UniParc:UPI0004EE3F0F
UniProt:A0A078IMV8MapMan:35.1::::
Description
BnaA09g13070DBnaA09g13070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMV8]
Coordinates
chrLK032903:+:16034..16933
Molecular Weight (calculated)
26675.3 Da
IEP (calculated)
9.401
GRAVY (calculated)
-0.456
Length
235 amino acids
Sequence
(BLAST)
001: MKNTERDFKA YQFLVTLYGR LGKLNEVYRI WRSLRLAMPK TSNVAYLNMI QVLVNLKDLP GAETLFKEWQ ANCSTYDIRV VNVMIGAYAR EGLIEKANEL
101: KEKSPRRGGK LNAKTWELFM DYYVKRGETA QALECMTKAV SIGKGDGGKW IPSEDTVRAL MSQFEEKKDV NGAESLIEIL KKGTDDVGAE TFASLIRTYA
201: AAGKSHPAMR QRLKMEKVKV DKATEKLLDE LCQDE
Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)
001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.