CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35213	Canola	cytosol	11.08	100.0
CDY35212	Canola	mitochondrion	72.16	95.02
AT1G43010.1	Thale cress	mitochondrion	32.43	46.69
CDY00734	Canola	mitochondrion	19.19	40.11
CDY27645	Canola	mitochondrion	26.49	37.84
CDY71968	Canola	plastid	28.65	36.3
CDY27647	Canola	mitochondrion	34.59	31.45
CDY48421	Canola	mitochondrion	34.86	31.23
CDY39781	Canola	mitochondrion	39.19	30.33
CDY03299	Canola	mitochondrion	37.84	29.6
CDY24553	Canola	mitochondrion	20.81	26.74
CDY50357	Canola	mitochondrion	13.78	25.5
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	32.7	24.25
CDY31943	Canola	plastid	31.08	23.71
CDY44801	Canola	mitochondrion	25.68	23.51
CDY05786	Canola	plastid	30.54	23.3
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	29.73	22.31
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	30.0	22.29
CDX73880	Canola	mitochondrion	30.0	22.16
CDY53325	Canola	mitochondrion	41.62	22.06
KRH26940	Soybean	cytosol	29.46	21.98
Solyc07g054100.1.1	Tomato	cytosol	18.92	21.67
PGSC0003DMT400047256	Potato	extracellular	18.92	21.67
KRH22399	Soybean	cytosol	27.57	21.43
CDY53324	Canola	mitochondrion, plastid	41.89	21.2
TraesCS1B01G188200.1	Wheat	mitochondrion	27.57	20.73
CDY15126	Canola	cytosol, mitochondrion, plastid	28.65	20.7
OQU91552	Sorghum	mitochondrion	28.11	20.39
CDX90079	Canola	mitochondrion	28.11	20.31
CDX98698	Canola	mitochondrion	26.76	20.29
TraesCS1D01G166700.1	Wheat	mitochondrion	27.03	20.2
CDX97288	Canola	mitochondrion	27.84	20.04
Os10t0501300-01	Rice	mitochondrion	27.57	19.88
CDX91277	Canola	mitochondrion	27.84	19.85
CDY19721	Canola	mitochondrion	25.41	19.71
CDX99984	Canola	mitochondrion	25.41	19.67
GSMUA_Achr5P20750_001	Banana	mitochondrion	28.92	19.6
CDX96239	Canola	mitochondrion	25.41	19.14
CDY46999	Canola	mitochondrion	25.41	19.14
Os10t0501000-01	Rice	cytosol	23.24	19.07
CDY25035	Canola	mitochondrion, plastid	25.14	18.98
Zm00001d032543_P001	Maize	mitochondrion	26.49	18.96
CDY15237	Canola	mitochondrion	26.22	18.91
CDY34141	Canola	mitochondrion	25.14	18.9
CDX89976	Canola	mitochondrion	25.95	18.64
CDY05574	Canola	mitochondrion	25.68	18.13
TraesCS1A01G168700.1	Wheat	mitochondrion	28.11	17.81
CDX91822	Canola	mitochondrion	24.05	17.8
CDY66759	Canola	cytosol	34.32	17.0
Os10t0501200-00	Rice	mitochondrion	28.11	16.61
CDX90962	Canola	mitochondrion	22.43	16.57
CDY39654	Canola	mitochondrion	25.95	15.97
CDY36566	Canola	mitochondrion	25.68	15.81
CDX94049	Canola	cytosol	26.76	14.1
CDY57695	Canola	mitochondrion	22.97	14.1
CDX97686	Canola	plastid	22.97	13.71
CDY30088	Canola	plastid	22.7	13.61
CDY06272	Canola	mitochondrion	19.46	13.58
CDY09903	Canola	mitochondrion	19.46	13.58
CDY50358	Canola	cytosol	7.57	11.91
CDX79395	Canola	cytosol	23.51	8.49
CDY24554	Canola	cytosol	0.81	1.96
CDY36565	Canola	cytosol	1.62	1.79

Protein Annotations

EnsemblPlants:CDY65573	EnsemblPlantsGene:GSBRNA2T00046825001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY65573	ProteinID:CDY65573.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EEF578	UniProt:A0A078JD75	MapMan:35.1	:	:	:

Description

BnaCnng47780DBnaCnng47780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD75]

Coordinates

chrLK034838:+:20475..21672

Molecular Weight (calculated)

42032.7 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.313

Length

370 amino acids

Sequence
(BLAST)

001: MMRHTMKLLG QQARRIQPSN IAPTSIRHAG TLVSPHRNNS ALLLRIATAI DQKTPVVQAL EQWREQGNQV KPADLRCIIK KLQDSEQFPH ALQISEWMSS
101: HRVYTLFPED MASRVLLMDT VLGLKEAERF FETIPETMKD YTVYTSLLTL YTRNDDTLDK AEAVFEKMRE LGFLLKPTPF NLMLSLYSPL KRHYNVNSLL
201: SEMEDNNVKP DDLTANHALL VYAAVSNIKA MEKFLSSNQR IKLEWGTCID MAKAYLKSGA TEKSLAMLHR TELLVDCASR KPAYEALMSV YGDVGEREDV
301: YRIWELHKNA GSSNEGYRAV ISALSSIGDM EGAEVIYREW ELGGLPFDAS IPNTLISGYH ALGMERRLRN

Best Arabidopsis Sequence Match ( AT1G28020.1 )
(BLAST)

001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.