Factsheet for Zm00001d032543_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91552	Sorghum	mitochondrion	85.88	87.06
Os10t0501300-01	Rice	mitochondrion	56.67	57.12
TraesCS1B01G188200.1	Wheat	mitochondrion	53.97	56.71
TraesCS1D01G166700.1	Wheat	mitochondrion	54.16	56.57
Os10t0501000-01	Rice	cytosol	48.55	55.65
TraesCS1A01G168700.1	Wheat	mitochondrion	54.74	48.46
Os10t0501200-00	Rice	mitochondrion	56.48	46.65
GSMUA_Achr5P20750_001	Banana	mitochondrion	41.78	39.56
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	31.33	35.68
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	31.91	34.52
PGSC0003DMT400058755	Potato	cytosol	25.15	32.91
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	31.72	32.73
AT2G20710.1	Thale cress	mitochondrion	28.63	30.2
Zm00001d013923_P001	Maize	mitochondrion	29.21	30.2
CDY39781	Canola	mitochondrion	27.66	29.92
Bra036673.1-P	Field mustard	mitochondrion	27.66	29.92
CDY03299	Canola	mitochondrion	27.27	29.81
KRH26940	Soybean	cytosol	28.05	29.23
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	27.85	29.21
Solyc07g054100.1.1	Tomato	cytosol	17.6	28.17
PGSC0003DMT400047256	Potato	extracellular	17.6	28.17
Zm00001d009122_P001	Maize	mitochondrion	28.05	28.16
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	27.08	28.11
Zm00001d023915_P001	Maize	mitochondrion	26.89	27.74
KRH22399	Soybean	cytosol	25.53	27.73
CDY35212	Canola	mitochondrion	14.51	26.69
CDY00734	Canola	mitochondrion	9.09	26.55
CDY65573	Canola	mitochondrion	18.96	26.49
Zm00001d002789_P001	Maize	plastid	25.73	25.93
Bra011054.1-P	Field mustard	mitochondrion	17.02	25.81
CDY27645	Canola	mitochondrion	12.77	25.48
Zm00001d052030_P001	Maize	plastid	25.73	25.33
AT1G28020.1	Thale cress	cytosol, plastid	24.18	25.3
CDY35213	Canola	cytosol	1.93	24.39
AT1G43010.1	Thale cress	mitochondrion	11.99	24.12
Zm00001d003500_P001	Maize	mitochondrion	19.73	24.11
CDY71968	Canola	plastid	13.15	23.29
Zm00001d045492_P004	Maize	cytosol	26.5	22.99
AT3G11380.1	Thale cress	mitochondrion	22.82	21.81
CDY05786	Canola	plastid	20.31	21.65
Zm00001d011182_P001	Maize	endoplasmic reticulum	20.5	21.54
Bra036496.1-P	Field mustard	plastid	20.12	21.44
CDY31943	Canola	plastid	19.92	21.24
Zm00001d024521_P001	Maize	mitochondrion	20.7	20.82
Bra032862.1-P	Field mustard	mitochondrion	15.09	20.58
CDY48421	Canola	mitochondrion	16.05	20.1
AT1G28000.1	Thale cress	mitochondrion	14.89	19.85
Bra032863.1-P	Field mustard	mitochondrion	15.09	19.5
CDY27647	Canola	mitochondrion	15.28	19.41
AT3G11350.1	Thale cress	mitochondrion	13.35	19.22
Bra032865.1-P	Field mustard	cytosol	20.31	18.29
Zm00001d040475_P001	Maize	mitochondrion	21.47	18.11
AT2G20720.1	Thale cress	cytosol	10.44	18.06
Zm00001d008224_P002	Maize	mitochondrion	21.66	18.01
CDY53325	Canola	mitochondrion	24.18	17.91
Bra001400.1-P	Field mustard	mitochondrion, plastid	25.92	17.89
CDY53324	Canola	mitochondrion, plastid	24.76	17.51
CDX73880	Canola	mitochondrion	14.7	15.17
CDY66759	Canola	cytosol	21.86	15.13
Bra032866.1-P	Field mustard	mitochondrion	15.86	12.85
Zm00001d019185_P001	Maize	cytosol	18.57	9.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100274385	MapMan:35.1	UniProt:B6SUS3	EMBL:EU956488	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM05326.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF625	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182B11A	EnsemblPlantsGene:Zm00001d032543	EnsemblPlants:Zm00001d032543_P001	EnsemblPlants:Zm00001d032543_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr1:-:230037686..230040058

Molecular Weight (calculated)

58144.6 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.248

Length

517 amino acids

Sequence
(BLAST)

001: MYRLFRRSFS MAAEGSAAAA SSSPPPSTSM SSTPRQHLPD ELYRRIMNVG RPSIPLSPVL EQWNQEGHTA KKFVIQAIVK KLVGLRRFAH ALELSFWMTD
101: RRHLHLSVGD VAYRLDLISK VHGLEKAVEY FGMVPKQLRK PQCYGSLLKC YVEAKAVDKA EEHFAKMQEM GMTSSYAYTW MMKLYLQTGQ LERVHAMFQD
201: MEEKGVKPDT FSVEAMLAAY IAAEDVQGVG KVLDKANPHE KLVTWHGHAS AASLFMKSGM QVGAVMALVE AERRISPKSS RIAYAFLLKT YTELGMHAEA
301: GRIWSVYKSK VPPCNTMYMS RLSALLRTND IDGAEATLKE WETVPLRYHD FRLINVMVDA YCREGLVEKA VALVDGAIKK GRTPYANTWY KLAGGFFKTG
401: QVPEAVDMTR KALDSATPPW RPDLANVLMS LNHFVDQKDV GAAEEMVSTL QKLVPLTRDV YHCLLKTYVR AGKPPSDLLE RMKEDGLEAD EETERILAGE
501: CERVDMHPLS ITNHLIG

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.