Factsheet for Bra011054.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35213	Canola	cytosol	12.02	100.0
AT1G43010.1	Thale cress	mitochondrion	31.38	41.63
Bra032862.1-P	Field mustard	mitochondrion	32.26	29.02
Bra032863.1-P	Field mustard	mitochondrion	33.14	28.25
Bra036673.1-P	Field mustard	mitochondrion	38.71	27.62
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	32.26	22.04
PGSC0003DMT400047256	Potato	extracellular	20.53	21.67
Solyc07g054100.1.1	Tomato	cytosol	20.53	21.67
Bra028632.1-P	Field mustard	mitochondrion	25.51	21.53
Bra036496.1-P	Field mustard	plastid	30.21	21.24
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	29.62	20.49
Bra001400.1-P	Field mustard	mitochondrion, plastid	44.57	20.29
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	29.62	20.28
KRH26940	Soybean	cytosol	29.33	20.16
KRH22399	Soybean	cytosol	27.57	19.75
Bra033215.1-P	Field mustard	mitochondrion	29.62	19.73
TraesCS1B01G188200.1	Wheat	mitochondrion	27.27	18.9
Os10t0501300-01	Rice	mitochondrion	28.15	18.71
Bra018528.1-P	Field mustard	mitochondrion	28.15	18.68
OQU91552	Sorghum	mitochondrion	27.57	18.43
TraesCS1D01G166700.1	Wheat	mitochondrion	26.69	18.38
Bra038762.1-P	Field mustard	mitochondrion	26.1	18.24
Bra020588.1-P	Field mustard	mitochondrion	25.81	17.92
Bra036629.1-P	Field mustard	mitochondrion	24.93	17.82
GSMUA_Achr5P20750_001	Banana	mitochondrion	28.15	17.58
Bra027131.1-P	Field mustard	mitochondrion	24.93	17.31
Os10t0501000-01	Rice	cytosol	22.87	17.29
Bra031484.1-P	Field mustard	mitochondrion	24.93	17.28
Bra032865.1-P	Field mustard	cytosol	28.74	17.07
Zm00001d032543_P001	Maize	mitochondrion	25.81	17.02
Bra033321.1-P	Field mustard	mitochondrion	25.51	16.89
Bra000902.1-P	Field mustard	mitochondrion	23.46	15.97
TraesCS1A01G168700.1	Wheat	mitochondrion	27.27	15.92
Os10t0501200-00	Rice	mitochondrion	28.45	15.5
Bra027226.1-P	Field mustard	plastid	23.17	13.12
Bra031586.1-P	Field mustard	mitochondrion	19.35	12.43
Bra032866.1-P	Field mustard	mitochondrion	21.41	11.44
Bra003559.1-P	Field mustard	cytosol	22.29	10.67
Bra026128.1-P	Field mustard	cytosol	26.1	9.56

Protein Annotations

EnsemblPlants:Bra011054.1	EnsemblPlants:Bra011054.1-P	EnsemblPlantsGene:Bra011054	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI00025458EB
UniProt:M4D3K0	MapMan:35.1	:	:	:	:

Description

AT1G28020 (E=2e-068) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA01:-:4216884..4218071

Molecular Weight (calculated)

38727.7 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.289

Length

341 amino acids

Sequence
(BLAST)

001: MMRHTMKLLG QQARRIQPSN IDPTSIRHAG TLVSPHRNNS ALLLRIATAI DQKTPVVEAL EQWKEQEWMS SHRVYTLFPE DMASRILLID TVLGLKEAER
101: FFETIPETMK DYTVYTSLLT LYTRNDDTLD KAEALFEKMR ELGFLLKPTP FNLMLSLYSP LKRHDNVNSL LSEMEDNNVK PDDLTANHAL LVYAAVSNIK
201: AMEKFLSSNQ RIKLEWGTCI DMAKAYLKSG ATEKSLAMLL RTELLVDCAS RKPAYEALMS VYGDVGERED VYRIWELHKN AGSSNEGYRA VISALSSIGD
301: MEGAEVIYRE WELGGLPFDA SIPNTLISGY HALGMERRLR N

Best Arabidopsis Sequence Match ( AT1G28020.1 )
(BLAST)

001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.