Factsheet for Bra026128.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39654	Canola	mitochondrion	60.9	94.34
AT1G15480.1	Thale cress	mitochondrion	48.12	75.42
Bra003559.1-P	Field mustard	cytosol	41.89	54.78
KRH66764	Soybean	cytosol	24.06	53.98
VIT_08s0007g05090.t01	Wine grape	mitochondrion	36.09	53.85
KRH69049	Soybean	mitochondrion	33.08	50.57
GSMUA_Achr5P27560_001	Banana	cytosol	27.71	50.29
GSMUA_Achr8P21680_001	Banana	mitochondrion	33.08	49.84
KRH31614	Soybean	mitochondrion	32.12	49.83
PGSC0003DMT400022632	Potato	mitochondrion	32.76	48.88
Solyc12g020050.1.1	Tomato	plastid	32.65	48.72
KRG95098	Soybean	mitochondrion	30.83	47.05
PGSC0003DMT400021596	Potato	mitochondrion	30.4	46.17
TraesCS3B01G220600.2	Wheat	mitochondrion	29.43	44.7
TraesCS3D01G195000.1	Wheat	mitochondrion	29.43	44.7
HORVU3Hr1G040710.1	Barley	mitochondrion	29.11	44.28
TraesCS3A01G191200.1	Wheat	mitochondrion	29.0	44.12
Os01t0280400-00	Rice	mitochondrion	28.89	44.03
Os12t0170100-01	Rice	mitochondrion	28.68	43.7
OQU86720	Sorghum	mitochondrion	28.57	43.39
Zm00001d008224_P002	Maize	mitochondrion	28.79	43.09
Zm00001d040475_P001	Maize	mitochondrion	28.25	42.9
GSMUA_Achr11P...	Banana	mitochondrion	28.79	42.68
Bra027226.1-P	Field mustard	plastid	26.96	41.69
Bra031484.1-P	Field mustard	mitochondrion	14.29	27.03
Bra027131.1-P	Field mustard	mitochondrion	14.18	26.88
Bra011054.1-P	Field mustard	mitochondrion	9.56	26.1
Bra036673.1-P	Field mustard	mitochondrion	13.0	25.31
Bra038762.1-P	Field mustard	mitochondrion	12.35	23.57
Bra020588.1-P	Field mustard	mitochondrion	12.24	23.22
Bra018528.1-P	Field mustard	mitochondrion	12.78	23.15
Bra000902.1-P	Field mustard	mitochondrion	12.35	22.95
Bra028632.1-P	Field mustard	mitochondrion	9.67	22.28
Bra036629.1-P	Field mustard	mitochondrion	11.39	22.22
Bra031586.1-P	Field mustard	mitochondrion	12.35	21.66
Bra033321.1-P	Field mustard	mitochondrion	11.49	20.78
Bra033215.1-P	Field mustard	mitochondrion	10.85	19.73
Bra032862.1-P	Field mustard	mitochondrion	7.52	18.47
Bra036496.1-P	Field mustard	plastid	9.45	18.14
Bra032863.1-P	Field mustard	mitochondrion	7.63	17.75
Bra032865.1-P	Field mustard	cytosol	9.02	14.63
Bra001400.1-P	Field mustard	mitochondrion, plastid	10.42	12.95
Bra032866.1-P	Field mustard	mitochondrion	7.52	10.97

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.5.4.19	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra026128	EnsemblPlants:Bra026128.1	EnsemblPlants:Bra026128.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR002885	InterPro:IPR011990
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EBG9	PFAM:PF00400	PFAM:PF01535	PFAM:PF13812
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS51375	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1
InterPro:Pentatricopeptide_repeat	SMART:SM00320	SUPFAM:SSF50978	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253F0A6
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT1G15480 (E=3e-253) | DNA binding

Coordinates

chrA06:+:5942015..5946555

Molecular Weight (calculated)

104125.0 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.429

Length

931 amino acids

Sequence
(BLAST)

001: MGVPLVCHGH SRPVVDVSYS PVTPDGFFLI SASKDSNPML RNGETGDWIG TFEGHKGAVW SCSLDKHAMR AASASADFTA KIWNALTGDE LHSFEHKHIV
101: RACAFSEDTH LLLTGGMEKI LRIFDMNRPD APPKEVGNSP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVQTLE TKFPVTSAEV SQDGRYITTA
201: DGSSVKFWDA NNFGLLKSYE MPCNVESASL EPKHGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYSPGGESY TSGSEDGTVR IWEVVGSVNH
301: EEKESDQSGN VKLVAEEVVR KAESLRIRGE MFALSKVVRR SQSLRLGACN AVYYSKLEIP LGERNGSVES NALIHDKHEA FSSSYELPWN YSTGRRSLSS
401: DAGARSSGEE DEIESLGTPD DTSGDSEDGL QSEEELSCDE AEIDGAELEL LSEAGKTQGS KRSSELFKAI VSVSGLSVAS ALDKWVEEGK EINRTEIANA
501: MLQLRRRRMY GRALQLAEWL EEHKQYEWEE RDYASRLDLI AKVRGLYKGE IYVERIHESF RGELVYRTLL ANYASTSNVR KAEAVFNKMK DLGFPRTSYA
601: CDQMLMLYKR VDKKKIADVL SMMEKENLKP TLYTYKILID AKGATNDISG MEEILETMKS EGVEVDLRAK SIVARHYASA GLKEKAEKVL KEIEGESLVA
701: NRYVCKDLLS IYGFLQRADE VSRIWKICEA NNPFYKESLA AILAFGKINK VKEAEAVFKK SVKMGHRVSS GMYSVLLRVY VDHKMVSEGK DLVKRMVDSG
801: CNIGALTWDA LIRLYVEAGE VEKADASLSK ATQLKQIKPL MSSFMYVMDE YARKGDVHNT EKIFQWMRQS GYHSRFRQFQ SLIQAYVNAK APAYGMKDRM
901: KADNVFPNRG LAVLLANADP FKKTPLSDLL D

Best Arabidopsis Sequence Match ( AT1G15480.1 )
(BLAST)

001: MFALSKVLRR SQSLRLGACN AVYSKLDIPL GERNIAIESN ALIHDKHEAL PRFYELSWSS STGRRSLSSD AGAKTTGDDD DLEDKNVDLA TPDETSSDSE
101: DGEEFSGDEG DIEGAELELH VPESKRPSEM FKAIVSVSGL SVGSALDKWV EQGKDTNRKE FESAMLQLRK RRMFGRALQM TEWLDENKQF EMEERDYACR
201: LDLISKVRGW YKGEAYIKTI PESFRGELVY RTLLANHVAT SNVRTAEAVF NKMKDLGFPL STFTCNQMLI LYKRVDKKKI ADVLLLLEKE NLKPNLNTYK
301: ILIDTKGSSN DITGMEQIVE TMKSEGVELD LRARALIARH YASAGLKEKA EKVLKEMEGE SLEENRHMCK DLLSVYGYLQ REDEVRRVWK ICEENPRYNE
401: VLAAILAFGK IDKVKDAEAV FEKVLKMSHR VSSNVYSVLL RVYVDHKMVS EGKDLVKQMS DSGCNIGALT WDAVIKLYVE AGEVEKAESS LSKAIQSKQI
501: KPLMSSFMYL MHEYVRRGDV HNTEKIFQRM KQAGYQSRFW AYQTLIQAYV NAKAPAYGMK ERMKADNIFP NKRLAAQLAK ADPFKKTPLS DLLD

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g15480, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XI21]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.